YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPS16
Organism:	Saccharomyces cerevisiae
Length:	121 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS16.

Description	E-value	Query Range	Subject Range
RT16_YEAST - 37S ribosomal protein S16, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151942779 - gi\|151942779\|gb\|EDN61125.1\| mitochondrial ribosomal protein [Saccharomyces cerevisiae YJM789] MRPS16 - Mitochondrial ribosomal protein of the small subunit gi\|190407932 - gi\|190407932\|gb\|EDV11197.1\| mitochondrial ribosomal protein S16 [Saccharomyces cerevisiae RM11-1a]	7.0E-36	[1..121]	[1..121]
ENSPTRT00000004940 - null MRPS16 - mitochondrial ribosomal protein S16	1.0E-27	[4..115]	[15..117]
gi\|7270412, gi\|3... - pir\|\|T05282 ribosomal protein S16, organellar - Arabidopsis thaliana, gi\|7270412\|emb\|CAB80179.1\| put...	2.0E-27	[6..111]	[3..94]
RS16_BRUME - 30S ribosomal protein S16 OS=Brucella melitensis GN=rpsP PE=3 SV=1 gi\|254700466 - gi\|254700466\|ref\|ZP_05162294.1\| 30S ribosomal protein S16 [Brucella suis bv. 5 str. 513] RS16_BRUO2 - 30S ribosomal protein S16 OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rpsP PE=3 SV... RS16_BRUC2 - 30S ribosomal protein S16 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpsP PE=3 SV=1 gi\|254703588 - gi\|254703588\|ref\|ZP_05165416.1\| 30S ribosomal protein S16 [Brucella suis bv. 3 str. 686] gi\|225628375, gi... - gi\|225628375\|ref\|ZP_03786409.1\| ribosomal protein S16 [Brucella ceti str. Cudo], gi\|225616221\|gb\|EEH... gi\|254694468 - gi\|254694468\|ref\|ZP_05156296.1\| 30S ribosomal protein S16 [Brucella abortus bv. 3 str. Tulya] gi\|254714663 - gi\|254714663\|ref\|ZP_05176474.1\| 30S ribosomal protein S16 [Brucella ceti M644/93/1] gi\|254717561 - gi\|254717561\|ref\|ZP_05179372.1\| 30S ribosomal protein S16 [Brucella ceti M13/05/1] gi\|254708325 - gi\|254708325\|ref\|ZP_05170153.1\| 30S ribosomal protein S16 [Brucella pinnipedialis M163/99/10] gi\|254708823 - gi\|254708823\|ref\|ZP_05170634.1\| 30S ribosomal protein S16 [Brucella pinnipedialis B2/94] RS16_BRUSU - 30S ribosomal protein S16 OS=Brucella suis biovar 1 (strain 1330) GN=rpsP PE=3 SV=1 RS16_BRUME - 30S ribosomal protein S16 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN... gi\|254719811 - gi\|254719811\|ref\|ZP_05181622.1\| 30S ribosomal protein S16 [Brucella sp. 83/13] RS16_BRUSU - 30S ribosomal protein S16 OS=Brucella suis GN=rpsP PE=3 SV=1	2.0E-27	[6..116]	[3..102]
RS16_RHILO - 30S ribosomal protein S16 OS=Rhizobium loti (strain MAFF303099) GN=rpsP PE=3 SV=1 RS16_RHILO - 30S ribosomal protein S16 OS=Rhizobium loti GN=rpsP PE=3 SV=1	5.0E-27	[6..121]	[3..107]
RS16_RHIME - 30S ribosomal protein S16 OS=Rhizobium meliloti GN=rpsP PE=3 SV=1 RS16_RHIME - 30S ribosomal protein S16 OS=Rhizobium meliloti (strain 1021) GN=rpsP PE=3 SV=1	7.0E-27	[6..116]	[3..103]
RS16_CAUCN - 30S ribosomal protein S16 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsP PE=3 SV=1 RS16_CAUCR - 30S ribosomal protein S16 OS=Caulobacter crescentus GN=rpsP PE=3 SV=1 RS16_CAUCR - 30S ribosomal protein S16 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rpsP PE=3 SV=1	1.0E-26	[5..119]	[1..105]
RT16_MOUSE - 28S ribosomal protein S16, mitochondrial OS=Mus musculus GN=Mrps16 PE=1 SV=1	2.0E-26	[4..97]	[15..98]
RT16_NEUCR - Ribosomal protein S16, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.... RT24_NEUCR, RT16... - (P08580) Mitochondrial ribosomal protein S24, Ribosomal protein S16, mitochondrial OS=Neurospora cra...	2.0E-26	[5..112]	[2..107]
RS16_LACLA - 30S ribosomal protein S16 OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=rpsP PE=3 SV=1 RS16_LACLA - 30S ribosomal protein S16 OS=Lactococcus lactis subsp. lactis GN=rpsP PE=3 SV=1	4.0E-26	[6..106]	[3..90]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCGLVRIRL ARFGRKNSPV YNIVVANSRK ARDAKPIEVL GTYVPVPSPV TKRELKRGVV  60
   61 PIKDVKLDFD RTKYWIGVGA QPSETVTKLL RKAGILNDAW ATSKNSNVNR KVVFERMETL 120
  121 E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	161.9897
Match:	1emwA_
Description:	Ribosomal protein S16
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits