| Protein: | YPL009C |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1038 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YPL009C.
| Description | E-value | Query Range |
Subject Range |
|
|
640.0 | [0..1] | [1027..1] |
|
|
637.0 | [0..1] | [1027..1] |
|
|
636.0 | [0..1] | [1027..1] |
|
|
623.0 | [0..1] | [1027..1] |
|
|
610.0 | [0..1] | [1027..1] |
|
|
594.0 | [0..1] | [1028..1] |
|
|
553.0 | [0..2] | [1021..3] |
|
Region A: Residues: [1-254] |
1 11 21 31 41 51
| | | | | |
1 MKQRISALDL LLLARELKQD LEGYRLSNIY NIADSSKQFL LKFNKPDSKL NVVVDCGLRI 60
61 YLTEFSRPIP PTPSGFVVKL RKHLKAKRLT ALKQVDQDRI LVLQFADGHF YLVLEFFSAG 120
121 NVILLDENRR IMALQRVVLE HENKVGQIYE MFDESLFTTN NESADESIEK NRKAEYTSEL 180
181 VNEWIKAVQA KYESDITVIK QLNIQGKEGA KKKKVKVPSI HKLLLSKVPH LSSDLLSKNL 240
241 KVFNIDPSES CLNL
|
| Detection Method: |  |
| Confidence: | 77.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [255-569] |
1 11 21 31 41 51
| | | | | |
1 LEETDSLAEL LNSTQLEYNQ LLTTTDRKGY ILAKRNENYI SEKDTADLEF IYDTFHPFKP 60
61 YINGGDTDSS CIIEVEGPYN RTLDKFFSTI ESSKYALRIQ NQESQAQKKI DDARAENDRK 120
121 IQALLDVQEL NERKGHLIIE NAPLIEEVKL AVQGLIDQQM DWNTIEKLIK SEQKKGNRIA 180
181 QLLNLPLNLK QNKISVKLDL SSKELNTSSD EDNESEGNTT DSSSDSDSED MESSKERSTK 240
241 SMKRKSNEKI NVTIDLGLSA YANATEYFNI KKTSAQKQKK VEKNVGKAMK NIEVKIDQQL 300
301 KKKLKDSHSV LKKIR
|
| Detection Method: | |
| Confidence: | 77.69897 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [570-700] |
1 11 21 31 41 51
| | | | | |
1 TPYFFEKYSW FISSEGFLVM MGKSPAETDQ IYSKYIEDDD IYMSNSFNSH VWIKNPEKTE 60
61 VPPNTLMQAG ILCMSSSEAW SKKISSSPWW CFAKNVSKFD GSDNSILPEG AFRLKNENDQ 120
121 NHLPPAQLVM G
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.612 | N/A | N/A | d.21.1 | Diaminopimelate epimerase-like |
| View | Download | 0.564 | N/A | N/A | d.371.1 | Description not found. |
| View | Download | 0.550 | N/A | N/A | d.21.1 | Diaminopimelate epimerase-like |
| View | Download | 0.539 | N/A | N/A | d.110.7 | Description not found. |
| View | Download | 0.510 | N/A | N/A | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.510 | N/A | N/A | d.58.20 | NAD-binding domain of HMG-CoA reductase |
| View | Download | 0.508 | N/A | N/A | d.21.1 | Diaminopimelate epimerase-like |
| View | Download | 0.480 | N/A | N/A | d.93.1 | SH2 domain |
| View | Download | 0.445 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
|
Region A: Residues: [701-928] |
1 11 21 31 41 51
| | | | | |
1 FGFLWKVKTS GNEDNGDDDE EEEEEEEEEE EEEEEEEEEE EEEKEEEEKE EEQQQDEDDS 60
61 NEVNGLEKGG DSNDSTKNNS FEHDNLEKDI EKHCTISSDT DSDSGNAKAK NDNSSTQRIL 120
121 DEPGVPISLI ENINSNVRGK RGKLKKIQKK YADQDETERL LRLEALGTLK GIEKQQQRKK 180
181 EEIMKREVRE DRKNKREKQR RLQALKFTKK EKARVNYDKH KSELKPSL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [929-1038] |
1 11 21 31 41 51
| | | | | |
1 DKGDVVDDII PVFAPWPALL KYKYKVKIQP GSAKKTKTLT EILHYFKSRP LDGSSTDNEM 60
61 DWPQEHEMIK GLKEQDLVLL LCVDKLKVTI AGQKSTKNGG NSSKKGKKKR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.770 | d.370.1 | Description not found. |
| View | Download | 0.533 | a.24.4 | Hemerythrin |
| View | Download | 0.532 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.479 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.479 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.458 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.394 | a.138.1 | Multiheme cytochromes |
| View | Download | 0.373 | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
