YRC Public Data Repository - Protein Structure Prediction

Protein:	FIT3
Organism:	Saccharomyces cerevisiae
Length:	204 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FIT3.

Description	E-value	Query Range	Subject Range
gi\|6164595 - gi\|6164595\|gb\|AAF04457.1\|AF078161_1 lacunin [Manduca sexta]	1.0E-53	[15..195]	[1221..1402]
FIT1 - Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor... FIT1_YEAST - Facilitator of iron transport 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FIT1 PE=...	2.0E-24	[1..172]	[1..167]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	7.0E-5	[4..199]	[1091..1288]
gi\|13492037, gi\|... - gi\|15722002\|gb\|AAL04416.1\| zonadhesin [Mus musculus], gi\|13517499\|gb\|AAK28824.1\|AF312033_9 ZAN [Mus ...	2.0E-4	[23..152]	[724..856]
gi\|16185874 - gi\|16185874\|gb\|AAL13970.1\| LP06813p [Drosophila melanogaster]	9.0E-4	[33..187]	[880..1037]
gi\|15489272, gi\|... - gi\|15489272\|gb\|AAH13737.1\| HDAC6 protein [Homo sapiens], gi\|119571133\|gb\|EAW50748.1\| histone deacety...	0.003	[36..188]	[713..865]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSSALVLS AVAATALAES ITTTITATKN GHVYTKTVTQ DATFVWGGED SYASSTSAAE  60
   61 SSAAETSAAE TSAAATTSAA ATTSAAETSS AAETSSADEG SGSSITTTIT ATKNGHVYTK 120
  121 TVTQDATFVW TGEGSSNTWS PSSTSTSSEA ATSSASTTAT TTAETSSSAT SSSTAELSSY 180
  181 TGAADAITAG TGLMGAALAA VMLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits