YRC Public Data Repository - Protein Structure Prediction

Protein:	FIT2
Organism:	Saccharomyces cerevisiae
Length:	153 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FIT2.

Description	E-value	Query Range	Subject Range
gi\|190407672 - gi\|190407672\|gb\|EDV10939.1\| facilitator of iron transport 2 precursor [Saccharomyces cerevisiae RM11... gi\|151945457 - gi\|151945457\|gb\|EDN63700.1\| conserved protein [Saccharomyces cerevisiae YJM789] FIT2 - Mannoprotein that is incorporated into the cell wall via a glycosylphosphatidylinositol (GPI) anchor... FIT2_YEAST - Facilitator of iron transport 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FIT2 PE=...	9.0E-25	[1..153]	[1..153]
gi\|20873290, gi\|... - gi\|23956226\|ref\|NP_083077.1\| mucin 5, subtype B, tracheobronchial [Mus musculus], gi\|20873290\|emb\|CA...	0.003	[4..118]	[2366..2474]
gi\|27374377 - gi\|27374377\|gb\|AAO01115.1\| CG4733-PA [Drosophila pseudoobscura]	0.005	[13..146]	[265..404]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSTIFGAT TVMTAVSAAA VSSVMTTKTI TATNGNNVYT KVVTDTADPI ISYSTTRTVV  60
   61 VSNSDATYTK VVTEGPDTTS EKSTTKTLTL TNGSGSSTNL YTKTVTQAVE SSTSSSSSSS 120
  121 SSSSSASSSG AAPAAFQGAS VGALALGLIS YLL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits