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View Structure Prediction Details

Protein: NDD1
Organism: Saccharomyces cerevisiae
Length: 554 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDD1.

Description E-value Query
Range
Subject
Range
NDD1 - Transcriptional activator essential for nuclear division; localized to the nucleus; essential compon...
gi|207340813 - gi|207340813|gb|EDZ69049.1| YOR372Cp-like protein [Saccharomyces cerevisiae AWRI1631]
NDD1_YEAST - Nuclear division defective protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDD...
gi|190407663 - gi|190407663|gb|EDV10930.1| hypothetical protein SCRG_01745 [Saccharomyces cerevisiae RM11-1a]
0.0 [1..554] [1..554]
gi|23619214, gi|... - gi|23619214|ref|NP_705176.1| hypothetical protein [Plasmodium falciparum 3D7], gi|23615421|emb|CAD52...
0.009 [407..553] [1289..1444]

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Predicted Domain #1
Region A:
Residues: [1-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRDISYQQN YTSTGATATS SRQPSTDNNA DTNFLKVMSE FKYNFNSPLP TTTQFPTPYS  60
   61 SNQYQQTQDH FANTDAHNSS SNESSLVENS ILPHHQQIQQ QQQQQQQQQQ QQQALGSLVP 120
  121 PAVTRTDTSE TLDDINVQPS SVLQFGNSLP SEFLVASPEQ FKEFLLDSPS TNFNFFHKTP 180
  181 AKTPLRFVTD SNGAQQSTTE NPGQQQNVFS NVDLNNLLKS NGKTPSSSCT GAFSRTPLSK 240
  241 IDMNLMFNQP LPTSPSKRFS SLSLTPYGRK ILNDVGTPYA KALISSNSAL VDFQKARKDI 300
  301 TTNATSIGLE NANNILQRTP LRSNNKKLFI KTPQDTINST STLTKDNENK QDIYGSSPTT 360
  361 IQLNSSITKS ISKLDNSRIP LLASRSDNIL DSNVDDQLFD LGLTRLPLSP TPNCNSLHST 420
  421 TTGTSALQIP ELPKMGSFRS DTGINPISSS NTVSFKSKSG NNNSKGRIKK NGKKPSKFQI 480
  481 IVANIDQFNQ DTSSSSLSSS LNASSSAGNS NSNVTKKRAS KLKRSQSLLS DSGSKSQARK 540
  541 SCNSKSNGNL FNSQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle