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View Structure Prediction Details

Protein: YOR338W
Organism: Saccharomyces cerevisiae
Length: 363 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR338W.

Description E-value Query
Range
Subject
Range
gi|207340855 - gi|207340855|gb|EDZ69077.1| YOR338Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190407633 - gi|190407633|gb|EDV10900.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
YO338_YEAST - SWIRM domain-containing protein YOR338W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...
YOR338W - Putative protein of unknown function; YOR338W transcription is regulated by Azf1p and its transcript...
0.0 [1..363] [1..363]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
1.0E-84 [4..322] [50..422]
gi|162457760, gi... - gi|18642468|emb|CAD22882.1| transcriptional adaptor [Zea mays], gi|162457760|ref|NP_001105146.1| tra...
6.0E-61 [103..351] [310..555]
gi|32417148, gi|... - gi|38636425|emb|CAE81961.1| conserved hypothetical protein [Neurospora crassa], gi|32417148|ref|XP_3...
gi|85118725 - gi|85118725|ref|XP_965493.1| hypothetical protein [Neurospora crassa OR74A]
1.0E-59 [71..363] [134..402]
gi|18101632 - gi|18101632|gb|AAL14200.2| transcriptional adaptor-like protein [Hypocrea jecorina]
1.0E-52 [104..354] [232..511]
gi|186509898, gi... - gi|6466957|gb|AAF13092.1|AC009176_19 unknown protein [Arabidopsis thaliana], gi|186509898|ref|NP_001...
4.0E-52 [100..352] [280..522]
gi|27263225 - gi|27263225|gb|AAN88029.1| ADA2A-1 [Drosophila melanogaster]
8.0E-52 [88..354] [275..535]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDNMQFHSP APEHPQLNGG INKIPASHKI GYKLNQQVQR LAVVRNNIEE RLNSMESSHG  60
   61 QISDSSVVRA IDASIDDFLI PSPPLSPKLR QCPIIS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPQLVNVESD HRELIMLTPV WEAGLNSQKY NHNTRNFLSQ YSFFRDMKTT KRIPNKENRK  60
   61 LKVVKSVVNS EALPKRRRYD RKIKRRSREL YEDDGNRSEN YDEESAQEVP VRSVTPIRQV 120
  121 KRSLHTISSP LASQGVVNNV PKYIPSMSWE KLPDYSPPLH TLPNSNNKVL KVEWKGSPMD 180
  181 LNHDPLKQRL HPAELVLAQI LRLPCDLYLD SKRRFFLEKV HRFKKGLPFR RTDAQKACRI 240
  241 DVNKASRLFA AFEKVGWLQD KHFEKYL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [250-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYSPPLHTLP NSNNKVLKVE WKGSPMDLNH DPLKQRLHPA ELVLAQILRL PCDLYLDSKR  60
   61 RFFLEKVHRF KKGLPFRRTD AQKACRIDVN KASRLFAAFE KVGWLQDKHF EKYL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 2cujA
Description: Solution structure of SWIRM domain of mouse transcriptional adaptor 2-like
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transcription regulator activity 3.61657063316558 bayes_pls_golite062009
DNA binding 3.20600447901865 bayes_pls_golite062009
nucleic acid binding 3.13775670276163 bayes_pls_golite062009
transcription factor activity 2.61318050866004 bayes_pls_golite062009
sequence-specific DNA binding 2.14408928200987 bayes_pls_golite062009
binding 2.12643314274039 bayes_pls_golite062009
RNA polymerase II transcription factor activity 1.77209608685482 bayes_pls_golite062009
transcription activator activity 1.75864690109096 bayes_pls_golite062009
protein binding 1.62529996900514 bayes_pls_golite062009
transcription repressor activity 0.605733396003465 bayes_pls_golite062009
specific RNA polymerase II transcription factor activity 0.380372494934551 bayes_pls_golite062009
chromatin binding 0.346262410069781 bayes_pls_golite062009
transcription factor binding 0.109547968922689 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle