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View Structure Prediction Details

Protein: SCD5
Organism: Saccharomyces cerevisiae
Length: 872 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCD5.

Description E-value Query
Range
Subject
Range
gi|151945408 - gi|151945408|gb|EDN63651.1| suppressor of clathrin deficiency [Saccharomyces cerevisiae YJM789]
SCD5 - Protein required for normal actin organization and endocytosis; targeting subunit for protein phosph...
SCD5_YEAST - Protein SCD5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCD5 PE=1 SV=1
gi|190407626 - gi|190407626|gb|EDV10893.1| protein SCD5 [Saccharomyces cerevisiae RM11-1a]
0.0 [1..872] [1..872]
gi|23497781, gi|... - gi|23509928|ref|NP_702595.1| hypothetical protein PF14_0706 [Plasmodium falciparum 3D7], gi|23497781...
3.0E-62 [294..784] [212..674]
RRBP1_MOUSE - Ribosome-binding protein 1 OS=Mus musculus GN=Rrbp1 PE=1 SV=2
7.0E-59 [195..866] [162..824]
gi|14133249 - gi|14133249|dbj|BAA92636.2| KIAA1398 protein [Homo sapiens]
6.0E-53 [197..868] [125..799]
RRBP1_CANLF - Ribosome-binding protein 1 OS=Canis lupus familiaris GN=RRBP1 PE=2 SV=1
2.0E-48 [197..868] [99..755]

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Predicted Domain #1
Region A:
Residues: [1-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFDWLNVPG LDLSSGDQAE KRPSNGLGPP SVSFDFGINT AAPHDSSFWD QGSRSHSDTT  60
   61 LSYRNNHSNT AADNATNVSS PQKDNPPNGE VRTLSGGDVY AESPEDMQVP LSLSQNQLTH 120
  121 EEIRTYLRWY HYICLRTHGK LVRLNDVFRF LTNFNLSQKV KDRIVEIFRS CKNALNIGQF 180
  181 FAVLRLVSRA IIYGILPLRR MILEK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [206-535]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APVPKPRPIL SSENHEEVYE EVEDDDSSAK TGDQKVDFDS FASLLLTGKT TRKRVRRRIK  60
   61 NLNFKSKKVR FSEHITFQDP PNLNQESSNN SEARKQDPDA EDEDQDSNND SPLDFTLPMD 120
  121 QLLKRLYKRR KNSGLVSSLP SEQQETEEEK KVLEDMKDSL SHFKQIQTVD SASLPISSVF 180
  181 LQNGNTLPTS NVNNTTVPQQ LPLEPLKPTA TGSANHLVRE EYNQGLHPSN GAIQTGLQPL 240
  241 KPTATGSANY LMRSHMEQPQ SIKPSSTPET VTNSGGLQPL KPTATGSANY LMKQHISPSV 300
  301 NNPVSSMFQA QFTNQSSSPQ STGPAFLNSP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [536-712]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NITLPQSNQQ QPYQEVNPTQ AKIEPSNISP QHTYSNNVRI NNGNIVSMPK VEITGAFPPQ  60
   61 NTLPQHQQSH LLSPQNTIPQ HQRSQLISPQ NTFTQNQPIL SPQHTYSNNQ ATMISPQNTY 120
  121 TNNQQQPQHL PPPPPPRAQQ QQQGAIVPPQ HMYSNVQKQN NLVPTQPSYT NSPSIQS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 2.045757
Match: 1m2vB_
Description: Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [713-872]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNFLSPQNAA NSYFQSLLSS SPSPNPTPSN ASTVNGNNAS NGISSFQNTS AAMNNTQSHQ  60
   61 TYIQQQQQQQ TQQRIYGGQL SQMQQHPGQL HLNNSDIHSQ PNKPNYGMLG QQVHQQQQQQ 120
  121 QQQFPFTADV NRSNSSDILG NLQSLQQQVD ALQIQYNRRP 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle