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View Structure Prediction Details

Protein: SLY41
Organism: Saccharomyces cerevisiae
Length: 453 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLY41.

Description E-value Query
Range
Subject
Range
gi|207340902 - gi|207340902|gb|EDZ69109.1| YOR307Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190407608 - gi|190407608|gb|EDV10875.1| protein SLY41 [Saccharomyces cerevisiae RM11-1a]
SLY41_YEAST - Uncharacterized transporter SLY41 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLY41 ...
SLY41 - Protein involved in ER-to-Golgi transport
1.0E-62 [1..453] [1..453]
gi|9295273 - gi|9295273|gb|AAF86906.1|AF223358_1 triose phosphate/phosphate translocator precursor [Mesembryanthe...
2.0E-47 [38..452] [66..399]
TPT_ORYSJ - Triose phosphate/phosphate translocator TPT, chloroplastic OS=Oryza sativa subsp. japonica GN=TPT PE...
9.0E-47 [41..453] [75..414]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
2.0E-46 [29..452] [53..396]
gi|13518113 - gi|13518113|gb|AAK27373.1| triose phosphate/phosphate translocator [Oryza sativa]
6.0E-46 [41..453] [75..414]
gi|85110407 - gi|85110407|ref|XP_963444.1| hypothetical protein NCU05453 [Neurospora crassa OR74A]
gi|32409655, gi|... - gi|32409655|ref|XP_325308.1| related to SLY41 protein [MIPS] [Neurospora crassa], gi|28925125|gb|EAA...
9.0E-46 [12..453] [62..470]
TPT_ARATH - Triose phosphate/phosphate translocator TPT, chloroplastic OS=Arabidopsis thaliana GN=TPT PE=1 SV=1
3.0E-45 [29..452] [59..405]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQTQSTAIK RRNSVHKNLF DPSLYQIPEP PRGGFQHQKK EYSKETFSNQ VFGYDITSLK  60
   61 KRFTQLFPSN IQGYLPEVDL RITIICSIWY VTSSISSNLS KAILRTFN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [109-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPIALTELQF LVSAVLCVGF ASIVNLFRLP RLKHTKFSKA LNSFPDGILP EYLDGNFRSS  60
   61 ILHKFLVPSK LVLMTTFPMG IFQFIGHITS HKAVSMIPVS LVHSVKALSP IITVGYYKFF 120
  121 EHRYYNSMTY YTLLLLIFGV MTTCWSTHGS KRASDNKSGS SLIGLLFAFI SMIIFVAQNI 180
  181 FAKNILTIRR KVGILPSSST DDVTSKEGQP SLDKTRFSPL QVDKITILFY CSCIGFSLTL 240
  241 LPFLTGELMH GGSVINDLTL ETVALVAIHG IAHFFQAMLA FQLIGLLSSI NYSVANIMKR 300
  301 IVVISVALFW ETKLNFFQVF GVILTIAGLY GYDKWGLSKK DGRQA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [320-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDKTRFSPLQ VDKITILFYC SCIGFSLTLL PFLTGELMHG GSVINDLTLE TVALVAIHGI  60
   61 AHFFQAMLAF QLIGLLSSIN YSVANIMKRI VVISVALFWE TKLNFFQVFG VILTIAGLYG 120
  121 YDKWGLSKKD GRQA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle