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View Structure Prediction Details

Protein: RAX1
Organism: Saccharomyces cerevisiae
Length: 435 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

No multiple sequence alignment data found for RAX1.

Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEELSKVSS MQNFEMIQRE RLPTLYEVLI QRTSQPVDLW TFYTFLSQFP YAINYLDFWV  60
   61 DLMTHTRLCK NYIELVRKSL INFP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.954 a.118.1 ARM repeat

Predicted Domain #2
Region A:
Residues: [85-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEQQQNGSTS TATFDLLNAL IEEGHLDPEA PDKLLENSGP DVPFSPKLNE LLGDWKHQSG  60
   61 IGQEALRNED VALIVDEIMK RRSQQDGKPQ ITTKQLLHSA VGLCNTYLVS PEQSERYLSN 120
  121 IPMETRNRII ESVQIERKYD IEIFDDLKNL TYQFLEMDCF PKFLSRVALH NIHDEISDWR 180
  181 FHSVGVTNEK S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.39794
Match: 1agrE
Description: Regulator of G-protein signalling 4, RGS4
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [276-435]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRSRGQTHIS RSPFSNHTSI SRIGFGLLWL GIGFWIGYVL IFLAYSRAIR VVTVVPFTLG  60
   61 CYCIVCGMYQ VDIVYSWFGV TQRLLHRHKN AGNDEGDASS DTDHVPMILA VFGGRRRLTR 120
  121 IEHPFTRQLL RKRGLWCLLL VVGATAAFTV IFSCVPGRRV 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle