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View Structure Prediction Details

Protein: CAF20
Organism: Saccharomyces cerevisiae
Length: 161 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAF20.

Description E-value Query
Range
Subject
Range
CAF20_YEAST - Cap-associated protein CAF20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAF20 PE=1 ...
CAF20 - Phosphoprotein of the mRNA cap-binding complex involved in translational control, repressor of cap-d...
3.0E-82 [1..161] [1..161]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKYTIDELF QLKPSLTLEV NFDAVEFRAI IEKVKQLQHL KEEEFNSHHV GHFGRRRSSH  60
   61 HHGRPKIKHN KPKVTTDSDG WCTFEAKKKG SGEDDEEETE TTPTSTVPVA TIAQETLKVK 120
  121 PNNKNISSNR PADTRDIVAD KPILGFNAFA ALESEDEDDE A

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Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
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Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle