YRC Public Data Repository - Protein Structure Prediction

Protein:	PEX27
Organism:	Saccharomyces cerevisiae
Length:	376 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PEX27.

Description	E-value	Query Range	Subject Range
PEX25 - Peripheral peroxisomal membrane peroxin required for the regulation of peroxisome size and maintenan... gi\|190407844 - gi\|190407844\|gb\|EDV11109.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] PEX25_YEAST - Peroxisomal membrane protein PEX25 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX25...	358.0	[0..96]	[365..104]
gi\|49527022 - gi\|49527022\|emb\|CAG60657.1\| unnamed protein product [Candida glabrata] gi\|49527022, gi\|... - gi\|50290561\|ref\|XP_447712.1\| hypothetical protein CAGL0I10879g [Candida glabrata CBS138], gi\|4952702...	160.0	[0..96]	[366..74]
gi\|44986176 - gi\|44986176\|gb\|AAS54716.1\| AGR226Wp [Ashbya gossypii ATCC 10895] gi\|45201322, gi\|... - gi\|45201322\|ref\|NP_986892.1\| AGR226Wp [Ashbya gossypii ATCC 10895], gi\|44986176\|gb\|AAS54716.1\| AGR22...	139.0	[0..125]	[365..62]
gi\|49644248\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|50310185, gi\|... - gi\|50310185\|ref\|XP_455112.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644248\|emb\|CAG9781...	135.0	[0..125]	[365..165]
gi\|46440941, gi\|... - gi\|68473625\|ref\|XP_719137.1\| potential peroxisome regulatory protein Pex25 [Candida albicans SC5314]... orf19.5575 - orf19.5575 CGDID:CAL0006238 Assembly 19, Contig19-10230 (109588, 107969) CDS, reverse complemented, ...	81.0	[0..120]	[365..267]
gi\|50412505, gi\|... - gi\|50412505\|ref\|XP_457136.1\| hypothetical protein DEHA0B03894g [Debaryomyces hansenii CBS767], gi\|49...	71.0	[0..113]	[365..230]

Back

Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSDPVNTNI SSPTLTDRNA DESWELLKRE FNTLFSNLKT DSKEEGNFTD NKGVIAKKPI  60
   61 VLQDNDDSDF TQNQGKVATA TSTTSDRSFK RTLGSIEMKK RYVKKN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [107-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CQAKFVFNTL EGKEVCSKIL QHTLGLLSLL LLTRKIRLLN FSSKLRLVIQ QLSLFRYYLR  60
   61 FGNFAINLYK IIKRFRWLRE MKKLHYKDQS ILFYFKNFRF FDIIEAFYNL TDELILFHKL 120
  121 QSMFGKKNTS HANTNRLMTF VKEQHYILWE VLNILAINKN IEQWRQLIRD EIYLSIYNTS 180
  181 GNAIKEYELK YKLPTNDKVN LELRKNNITL DFYKIILNLL SNLINIKGKR DKYNSELAYE 240
  241 IISVGSGVTE LLKLWNRAKV TSANEHTSAV