YRC Public Data Repository - Protein Structure Prediction

Protein:	SYC1
Organism:	Saccharomyces cerevisiae
Length:	188 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYC1.

Description	E-value	Query Range	Subject Range
YSH1 - Putative endoribonuclease, subunit of the mRNA cleavage and polyadenylation specificity complex; req... gi\|190405336 - gi\|190405336\|gb\|EDV08603.1\| hypothetical protein SCRG_04228 [Saccharomyces cerevisiae RM11-1a] gi\|151940984 - gi\|151940984\|gb\|EDN59365.1\| cleavage factor II (CF II) component [Saccharomyces cerevisiae YJM789] YSH1_YEAST - Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YSH1 PE=1 SV=1	210.0	[0..10]	[188..568]
gi\|73979712 - gi\|73979712\|ref\|XP_856134.1\| PREDICTED: similar to Cleavage and polyadenylation specificity factor, ...	201.0	[0..26]	[187..475]
CPSF3_BOVIN - Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=1 SV=1	200.0	[0..26]	[187..524]
gi\|114576006 - gi\|114576006\|ref\|XP_001154379.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	198.0	[0..26]	[187..528]

Back

Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLPKDKSDR THQRINLNNS GTDRTNDLYL HIVQTFGCIE TTATENATKL LMLGDVEVEI  60
   61 SASSVSIEWT QKSMISQTIA DSIVIMIIGL CASDKNVLSE SELKERNHNV WKIQELQNLF 120
  121 REQFGDSFSI DEGIGKKENV KNGSVTIGKS KATIDFSTMK LIDCNSNPLK GRVESILSIG 180
  181 QKLTTPLC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits