Protein: | MED4 |
Organism: | Saccharomyces cerevisiae |
Length: | 284 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED4.
Description | E-value | Query Range |
Subject Range |
|
6.0E-90 | [1..268] | [1..268] |
|
2.0E-63 | [58..263] | [54..256] |
|
2.0E-60 | [16..279] | [79..326] |
|
5.0E-60 | [58..263] | [54..256] |
|
1.0E-58 | [58..282] | [23..234] |
|
4.0E-39 | [78..240] | [153..334] |
|
8.0E-35 | [68..204] | [40..174] |
Region A: Residues: [1-64] |
1 11 21 31 41 51 | | | | | | 1 MSVQDTKAVE FSMGHIRSSS VSLVAEATSN TNSEDKLSKV QLYEDLCRYE DTLSKLVESV 60 61 DRFK |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.648 | 0.978 | transcription from RNA polymerase II promoter | a.4.1 | Homeodomain-like |
Region A: Residues: [65-284] |
1 11 21 31 41 51 | | | | | | 1 PNLDIAKDLI RTDEALFENV KLLAEYDNIY RNLQKIDKDS EELDSKTRKI LEILNECHDE 60 61 LKALPMLEQV EFEKNTILQQ RSKINSTELL DYATKLSKFT KIPPTFDKGA VGPNNFIWPA 120 121 EDALRRGMLA MASLHSKELT RIPGEEVEET EVPTVPPSQS EEQKGQMAKK EGTPKTDSFI 180 181 FDGTAKEVGD EADNTKDKEK EENNDDALDL DLDLFDPDDF |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.