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View Structure Prediction Details

Protein: PET123
Organism: Saccharomyces cerevisiae
Length: 318 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PET123.

Description E-value Query
Range
Subject
Range
gi|207341105 - gi|207341105|gb|EDZ69252.1| YOR158Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190407476 - gi|190407476|gb|EDV10743.1| mitochondrial ribosomal protein of small subunit [Saccharomyces cerevisi...
RTPT_YEAST - 37S ribosomal protein PET123, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...
PET123 - Mitochondrial ribosomal protein of the small subunit; PET123 exhibits genetic interactions with PET1...
gi|151945776 - gi|151945776|gb|EDN64017.1| mitochondrial ribosomal small subunit component [Saccharomyces cerevisia...
0.0 [1..301] [1..301]
P85AA_XENLA - Phosphatidylinositol 3-kinase regulatory subunit alpha OS=Xenopus laevis GN=pik3r1-a PE=2 SV=1
6.0E-4 [83..222] [488..619]

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Predicted Domain #1
Region A:
Residues: [1-66]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGAAKYGF KSGVFPTTRS ILKSPTTKQT DIINKVKSPK PKGVLGIGYA KGVKHPKGSH  60
   61 RLSPKV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [67-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFIDVDNLIA KTVAEPQSIK SSNGSAQKVR LQKAELRRKF LIEAFRKEEA RLLHKHEYLQ  60
   61 KRTKELEKAK ELELEKLNKE KSSDLTIMTL DKMMSQPLLR NRSPEESELL KLKRNYNRSL 120
  121 LNFQAHKKKL NELLNLYHVA NEFIVTESQL LKKIDKVF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [225-318]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDETEEFTDA YDVTSNFTQF GNRKLLLSGN TTLQTQINNA IMGSLSNEKF FDISLVDSYL  60
   61 NKDLKNISNK IDSKLNPTSN GAGNNGNNNN TTNL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle