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View Structure Prediction Details

Protein: SPP2
Organism: Saccharomyces cerevisiae
Length: 185 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPP2.

Description E-value Query
Range
Subject
Range
gi|676863 - gi|676863|gb|AAA62318.1| Spp2p
2.0E-64 [1..185] [1..185]
GPKOW - G patch domain and KOW motifs
gi|15811782 - ref|NP_056513.2| G patch domain and KOW motifs [Homo sapiens]
2.0E-28 [58..155] [113..212]
MOS2_ARATH - Protein MOS2 OS=Arabidopsis thaliana GN=MOS2 PE=2 SV=1
3.0E-25 [48..149] [106..198]
CE06300 - status:Confirmed UniProt:Q21924 protein_id:CAA94367.1
1.0E-21 [39..150] [101..196]
gi|17944999 - gi|17944999|gb|AAL48562.1| RE03814p [Drosophila melanogaster]
5.0E-16 [52..150] [119..202]
gi|6478853 - gi|6478853|dbj|BAA87248.1| Hypothetical nuclear protein [Schizosaccharomyces pombe]
7.0E-14 [77..151] [29..91]
SPP2_SCHPO - Pre-mRNA-splicing factor cwf28 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf28 PE=1 ...
cwf28 - splicing factor Cwf28
9.0E-14 [77..151] [168..230]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFSLKLGS KTLKKNISKK TKKKNSLQKA NLFDWDDAET ASLSHKPQSK IKIQSIDKFD  60
   61 LDEESSSKKK LVIKLSENAD TKKNDAPLVE YVTEKEYNEV PVEEFGDALL RGMGWESDSE 120
  121 QDSKGDKTQS RNKDVSNVSQ IHPDGLGIGA KLNKAINVEE ASFMPVVKID KITGTKVDDD 180
  181 KKNKS

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Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle