Protein: | SFL1 |
Organism: | Saccharomyces cerevisiae |
Length: | 766 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFL1.
Description | E-value | Query Range |
Subject Range |
|
270.0 | [0..60] | [324..16] |
|
270.0 | [0..58] | [313..3] |
|
270.0 | [0..58] | [313..68] |
|
268.0 | [0..58] | [313..3] |
|
265.0 | [0..31] | [326..3] |
|
265.0 | [0..58] | [313..3] |
|
265.0 | [0..31] | [324..7] |
Region A: Residues: [1-176] |
1 11 21 31 41 51 | | | | | | 1 MSEEETVSAP APASTPAPAG TDVGSGGAAA GIANAGAEGG DGAEDVKKHG SKMLVGPRPP 60 61 QNAIFIHKLY QILEDESLHD LIWWTPSGLS FMIKPVERFS KALATYFKHT NITSFVRQLN 120 121 IYGFHKVSHD HSSNDANSGD DANTNDDSNT HDDNSGNKNS SGDENTGGGV QEKEKS |
Detection Method: | |
Confidence: | 144.325697 |
Match: | 1hksA |
Description: | SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN OF DROSOPHILA HEAT SHOCK TRANSCRIPTION FACTOR |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [177-294] |
1 11 21 31 41 51 | | | | | | 1 NPTKIWEFKH SSGIFKKGDI EGLKHIKRRA SSRNNSSINS RKNSSNQNYD IDSGARVRPS 60 61 SIQDPSTSSN SFGNFVPQIP GANNSIPEYF NNSHVTYENA NHAPLESNNP EMQEQNRP |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.410 | N/A | N/A | d.379.1 | Description not found. |
View | Download | 0.352 | N/A | N/A | a.3.1 | Cytochrome c |
View | Download | 0.299 | N/A | N/A | d.15.6 | Superantigen toxins, C-terminal domain |
View | Download | 0.291 | N/A | N/A | c.44.1 | Phosphotyrosine protein phosphatases I |
View | Download | 0.278 | N/A | N/A | g.45.1 | Pyk2-associated protein beta ARF-GAP domain |
View | Download | 0.260 | N/A | N/A | a.3.1 | Cytochrome c |
Region A: Residues: [295-370] |
1 11 21 31 41 51 | | | | | | 1 PNFQDETLKH LKEINFDMVK IIESMQHFIS LQHSFCSQSF TFKNVSKKKS ENIVKDHQKQ 60 61 LQAFESDMLT FKQHVM |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.883 | a.2.15 | Description not found. |
View | Download | 0.864 | a.29.13 | Description not found. |
View | Download | 0.861 | a.2.7 | tRNA-binding arm |
View | Download | 0.861 | a.2.7 | tRNA-binding arm |
View | Download | 0.849 | a.29.13 | Description not found. |
View | Download | 0.796 | a.2.17 | Description not found. |
View | Download | 0.774 | a.2.8 | Eukaryotic DNA topoisomerase I, dispensable insert domain |
View | Download | 0.650 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
View | Download | 0.633 | a.2.7 | tRNA-binding arm |
Region A: Residues: [371-538] |
1 11 21 31 41 51 | | | | | | 1 SRAHRTIDSL CAVNAAATAA SVAPAPAPTS TSAYAPKSQY EMMVPPGNQY VPQKSSSTTN 60 61 IPSRFNTASV PPSQLLYNTN RSRNQHVTYA SEPAHVPNFI NQPIPIQQLP PQYADTFSTP 120 121 QMMHNPFASK NNNKPGNTKR TNSVLMDPLT PAASVGVQGP LNYPIMNI |
Region A: Residues: [539-607] |
1 11 21 31 41 51 | | | | | | 1 NPSVRDYNKP VPQNMAPSPI YPINEPTTRL YSQPKMRSLG STSSLPNDRR NSPLKLTPRS 60 61 SLNEDSLYP |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.541 | a.60.2 | RuvA domain 2-like |
View | Download | 0.526 | a.60.1 | SAM/Pointed domain |
View | Download | 0.396 | a.60.2 | RuvA domain 2-like |
View | Download | 0.395 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
View | Download | 0.379 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
View | Download | 0.358 | a.60.1 | SAM/Pointed domain |
View | Download | 0.245 | c.55.4 | Translational machinery components |
View | Download | 0.207 | a.76.1 | Iron-dependent represor protein, dimerization domain |
Region A: Residues: [608-766] |
1 11 21 31 41 51 | | | | | | 1 KPRNSLKSSI SGTSLSSSFT LVANNPAPIR YSQQGLLRSL NKAANCAPDS VTPLDSSVLT 60 61 GPPPKNMDNL PAVSSNLINS PMNVEHSSSL SQAEPAPQIE LPQPSLPTTS TTKNTGEADN 120 121 SKRKGSGVYS LLNQEDSSTS SADPKTEDKA APALKKVKM |