Protein: | AFI1 |
Organism: | Saccharomyces cerevisiae |
Length: | 893 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AFI1.
Description | E-value | Query Range |
Subject Range |
|
441.0 | [0..26] | [672..49] |
|
432.0 | [0..13] | [864..16] |
|
216.0 | [0..1] | [100..1] |
|
67.0 | [0..20] | [248..82] |
|
67.0 | [0..26] | [248..133] |
|
56.0 | [0..139] | [490..48] |
|
54.0 | [0..20] | [246..71] |
|
54.0 | [0..26] | [244..110] |
|
51.0 | [0..161] | [252..437] |
Region A: Residues: [1-105] |
1 11 21 31 41 51 | | | | | | 1 MLRRELNNSI SNRSIENESF PFERPNVSYI ISAEFDNKLG PILKHQYPKD IPGFNQFSHE 60 61 QRNGNTSVSM NLASLMIPSS IERNPGKQDI TVFTLYYNKF TQNYQ |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.231 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.218 | N/A | N/A | a.182.1 | GatB/YqeY domain |
Region A: Residues: [106-655] |
1 11 21 31 41 51 | | | | | | 1 LFPVPKDPRF SFNLHHREQS DGSVTNSIYY DAENHQDAKN NRYTIVLEDD ELECQEVQNN 60 61 QKAIDNEPLF FINVANTVLD TTNDRGAVIK SIAIGTPLKT FFAFKNIIVL VLDLYMKAPT 120 121 QAAATDILLD CFNMLNSIDL TLINDIHSKS SIQEVLHSIH DESIITKVFL DPDSTLKKLF 180 181 CINGFDTKDK YGNIVTFHDQ LIQYHFTRFQ PKTLPPFLLK IPLQFNMIRR EPIYIENDYN 240 241 ELVLKFLDKF VPYLLKAGQK VNAWKLVINS TKLSKEDLCA FILSLANITA TYASDPQSYF 300 301 KGNAALIFPY MDISLVDGLR AYVASNSDFV GCFAIIGTAN PIFRYQLDIW DYYYDVDEGV 360 361 FYENNSPEKE KPDTVAEVKI GPNPLRKIFN RPHFSTNAVN ESQVNLGQKL FSLLIDEYHD 420 421 SDTIMSVLRR LNVLQLENLL DALKRREIPP NIALKDEYIM FYKDFFIFPE FFDYFTLHSI 480 481 ELLSNLDNCL FSLGNTCQLF STEQIYSQLS QILDIVKELF RMVSVSRTNI EKFLNACLNY 540 541 SPFKILPTAQ |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [656-893] |
1 11 21 31 41 51 | | | | | | 1 LHGDNISRWS FESEVRQGFD NFNSYMGIEK DPHGVIVSAI DLFTQIYSFD ILAFFLTFIT 60 61 KESGQDLPFT KSLSRRRTYL TRIAQSSSLR QFLQLSTRPN IRILGGNGQG TGNSNYPEFT 120 121 NASSVISPKL RASPLLERRA SKICYAITKL LYRLECHPIG MALLKKYLHN QLREAYLESK 180 181 RHFISKKGDS TNTSSTIASS SFAGASVPLS SNESGMLNGL KQINEQQEST LETTQKED |