YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YOR088W
Organism: Saccharomyces cerevisiae
Length: 482 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOR088W.

Description E-value Query
Range
Subject
Range
SCN9A_RABIT - Sodium channel protein type 9 subunit alpha OS=Oryctolagus cuniculus GN=SCN9A PE=2 SV=1
2.0E-87 [31..466] [1500..1946]
gi|9967846, gi|4... - gi|9967846|emb|CAC06051.2| putative capacitative calcium entry channel [Cavia porcellus], gi|4132408...
8.0E-87 [36..482] [396..885]
gi|13699914, gi|... - gi|16758330|ref|NP_446011.1| transient receptor potential cation channel, subfamily C, member 6 [Rat...
1.0E-85 [36..482] [433..922]
TRPC6 - transient receptor potential cation channel, subfamily C, member 6
2.0E-85 [36..482] [434..923]
gi|3766191 - gi|3766191|gb|AAC64394.1| putative capacitative calcium entry channel [Mus musculus]
5.0E-84 [36..482] [379..868]

Back

Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMERMDSPK WLGSHNFYQG RFTGGSVIDL SFQPRKIKGA CIPKLFADDL LILFLGLYTL  60
   61 VVNGKDSERV QS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [73-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDLLESIFYV FNTGFILDEL TKLYYIGYAH LSFWNLFNDT TYLIITFAMG FRAMSVTPLN  60
   61 AKYSSEDWDK ISYRVLSCAA PFVWSRLLLY LESQRFIGIM LVILKHMMKE SIVFFFLLFL 120
  121 IMIGFTQGFL GLDSADGKRD ITGPILGNLT ITVLGLGSFD VFEEFAPPYA AILYYGYYFI 180
  181 VSVILLNILI ALY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 17.229148
Match: PF00520
Description: Ion transport protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [266-380]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STAYQKVIDN ADDEYMALMS QKTLRYIRAP DEDVYVSPLN LIEVFMTPIF RILPPKRAKD  60
   61 LSYTVMTIVY SPFLLLISVK ETREARRIKY NRMKRLNDDA NEYDTPWDLT DGYLD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [381-482]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDDGLFSDNR NSGMRATQLK NSRSLKLQRT AEQEDVHFKV PKKWYKNVKK CSPSFEQYDN  60
   61 DDTEDDAGED KDEVKELTKK VENLTAVITD LLEKLDIKDK KE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle