YRC Public Data Repository - Protein Structure Prediction

Protein:	OST3
Organism:	Saccharomyces cerevisiae
Length:	350 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OST3.

Description	E-value	Query Range	Subject Range
gi\|31981111, gi\|... - gi\|62901722\|gb\|AAY18812.1\| MAGT1 [Mus musculus], gi\|31981111\|ref\|NP_080228.2\| implantation-associate...	0.0	[4..343]	[18..333]
MAGT1_RAT - Magnesium transporter protein 1 OS=Rattus norvegicus GN=Magt1 PE=2 SV=2	0.0	[4..343]	[18..333]
gi\|190407419 - gi\|190407419\|gb\|EDV10686.1\| oligosaccharyl transferase glycoprotein complex 34 kDa gamma subunit [Sa... OST3_YEAST - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3 OS=Saccharomyces cerevisiae... gi\|207341188 - gi\|207341188\|gb\|EDZ69309.1\| YOR085Wp-like protein [Saccharomyces cerevisiae AWRI1631] OST3 - Gamma subunit of the oligosaccharyltransferase complex of the ER lumen, which catalyzes asparagine-l...	0.0	[1..350]	[1..350]
gi\|114618880 - gi\|114618880\|ref\|XP_001140529.1\| PREDICTED: similar to Tumor suppressor candidate 3 isoform 6 [Pan t... gi\|109085683 - gi\|109085683\|ref\|XP_001094182.1\| PREDICTED: similar to tumor suppressor candidate 3 isoform b isofor... gi\|123999209, gi... - gi\|123999209\|gb\|ABM87184.1\| tumor suppressor candidate 3 [synthetic construct], gi\|123988882\|gb\|ABM8... gi\|119584242, gi... - gi\|30410790\|ref\|NP_839952.1\| tumor suppressor candidate 3 isoform b [Homo sapiens], gi\|14714487\|gb\|A...	3.0E-96	[2..343]	[24..345]
CE00457 - status:Confirmed UniProt:P34669 protein_id:AAA28222.1	7.0E-91	[25..343]	[15..329]
OST3A_ARATH - Probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3A OS=Arabidopsis th...	2.0E-81	[1..340]	[7..336]
gi\|10198653 - gi\|10198653\|gb\|AAF87582.2\|AF275675_1 unknown [Ochlerotatus triseriatus]	9.0E-80	[46..343]	[2..273]

Back

Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWLFLVSLV FFCGVSTHPA LAMSSNRLLK LANKSPKKII PLKDSSFENI LAPPHENAYI  60
   61 VALFTATAPE IGCSLCLELE SEYDTIVASW FDDHP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [96-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAKSSNSDTS IFFTKVNLED PSKTIPKAFQ FFQLNNVPRL FIFKPNSPSI LDHSVISIST  60
   61 DTGSERMKQI IQAIKQFSQV NDFSLHLPMD WTPIITSTII TFITVLLFKK QSKLMFSIIS 120
  121 SRIIWATLST FFIICMISAY MFNQIRNTQL AGVGPKGEVM YFLPNEFQHQ FAIETQVMVL 180
  181 IYGTLAALVV VLVKGIQFLR SHLYPETKKA YFIDAILASF CALFIYVFFA ALTTVFTIKS 240
  241 PAYPFPLLRL SAPFK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits