| Protein: | GYP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 637 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GYP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..637] | [1..637] |
|
|
1.0E-89 | [21..636] | [483..1085] |
|
|
5.0E-88 | [21..636] | [31..633] |
|
|
1.0E-80 | [99..576] | [22..504] |
|
|
3.0E-79 | [106..636] | [3..515] |
|
Region A: Residues: [1-238] |
1 11 21 31 41 51
| | | | | |
1 MGVRSAAKEM HERDHNSDSS SLVTSLMKSW RISSASSSKK PSLYKMNTTE STSLPSGYAS 60
61 SADRDRRTSD GNFEAMAKQQ ASTRRTSNSY SPLRYVNPTL STASNESPRP ALLLRQHHQR 120
121 HHHHQQPRHS SSGSVGNNCS NSTEPNKKGD RYFKDLDEDW SAVIDDYNMP IPILTNGGFG 180
181 TPVAPTRTLS RKSTSSSINS ISNMGTSAVR NSSSSFTYPQ LPQLQKEKTN DSKKTQLE
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [239-445] |
1 11 21 31 41 51
| | | | | |
1 IENERDVQEL NSIIQRISKF DNILKDKTII NQQDLRQISW NGIPKIHRPV VWKLLIGYLP 60
61 VNTKRQEGFL QRKRKEYRDS LKHTFSDQHS RDIPTWHQIE IDIPRTNPHI PLYQFKSVQN 120
121 SLQRILYLWA IRHPASGYVQ GINDLVTPFF ETFLTEYLPP SQIDDVEIKD PSTYMVDEQI 180
181 TDLEADTFWC LTKLLEQITD NYIHGQP
|
|
Region B: Residues: [499-539] |
1 11 21 31 41 51
| | | | | |
1 RMWDTYLSET SQEVTSSYSM SSNDIKPPVT PTEPRVASFV T
|
| Detection Method: | |
| Confidence: | 10084.0 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [446-498] |
1 11 21 31 41 51
| | | | | |
1 GILRQVKNLS QLVKRIDADL YNHFQNEHVE FIQFAFRWMN CLLMREFQMG TVI
|
|
Region B: Residues: [540-637] |
1 11 21 31 41 51
| | | | | |
1 PTKDFQSPTT ALSNMTPNNA VEDSGKMRQS SLNEFHVFVC AAFLIKWSDQ LMEMDFQETI 60
61 TFLQNPPTKD WTETDIEMLL SEAFIWQSLY KDATSHWL
|
| Detection Method: | |
| Confidence: | 10084.0 |
| Match: | 1fkmA_ |
| Description: | Ypt/Rab-GAP domain of gyp1p |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| GTPase regulator activity | 1.01713431388195 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 1.01642360334206 | bayes_pls_golite062009 |
| GTPase activator activity | 0.505325037853263 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.434818760059511 | bayes_pls_golite062009 |
