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View Structure Prediction Details

Protein: RSB1
Organism: Saccharomyces cerevisiae
Length: 354 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSB1.

Description E-value Query
Range
Subject
Range
gi|50293595, gi|... - gi|50293595|ref|XP_449209.1| unnamed protein product [Candida glabrata], gi|49528522|emb|CAG62183.1|...
gi|49528522|emb|... - unnamed protein product [Candida glabrata CBS 138]
317.0 [0..1] [318..1]
gi|90300648, gi|... - gi|90300648|gb|EAS30279.1| hypothetical protein CIMG_05758 [Coccidioides immitis RS], gi|119181260|r...
gi|240108922 - gi|240108922|gb|EER27091.1| parasitic phase-specific protein PSP-1 [Coccidioides posadasii C735 delt...
314.0 [0..3] [279..23]
gi|16904126 - gi|16904126|gb|AAL30767.1|AF435426_1 parasitic phase-specific protein PSP-1 [Coccidioides posadasii]
311.0 [0..3] [279..8]
YEO2_SCHPO - Uncharacterized protein C17G6.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17G6...
SPAC17G6.02c - RTA1-like protein
305.0 [0..2] [294..10]
gi|49644940 - gi|49644940|emb|CAG98512.1| KLLA0F16082p [Kluyveromyces lactis]
gi|50311559, gi|... - gi|50311559|ref|XP_455804.1| unnamed protein product [Kluyveromyces lactis], gi|49644940|emb|CAG9851...
281.0 [0..2] [290..33]
RTA1_YEAST - Protein RTA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTA1 PE=1 SV=1
RTA1 - Protein involved in 7-aminocholesterol resistance; has seven potential membrane-spanning regions; ex...
259.0 [0..3] [276..13]
gi|60473563, gi|... - gi|66824171|ref|XP_645440.1| hypothetical protein [Dictyostelium discoideum AX4], gi|60473563|gb|EAL...
gi|60473563, gi|... - gi|60473563|gb|EAL71505.1| hypothetical protein DDB0168536 [Dictyostelium discoideum], gi|28830189|g...
233.0 [0..3] [278..22]

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Predicted Domain #1
Region A:
Residues: [1-183]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPNLRFNIT MIVIWGILLT IHVVQLLMRQ YWFSIAFICT GILEVLGFIG RTWSHSNVAD  60
   61 MDAFLLNMIC LTIAPVFTMG GIYYQLAKLI EVYGHRFSLL PSPMAYSFIF ICSDIVSLVV 120
  121 QAVGGGLCGV AVTDGTSTTT GNHVFIAGLA IQVASMAIFL MLWFHFLFRI YISVRWEHIN 180
  181 SRP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.894 a.24.27 Description not found.

Predicted Domain #2
Region A:
Residues: [184-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISLSLLKISQ TEVDYLYREK FHFLRLEPKR WVFHYFNLAI TVAVLTIFTR CCYRLAELVV  60
   61 GWDGYLITHE WYFIILDALM MAIATVTLTI FHPGFAFKGR STSIPITPGH VDPETLPHTD 120
  121 DVEDILDTSD SKQFDIEKEE FQASMKYPIS TFKQFMSKIA NLFSSKKKAK L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle