YRC Public Data Repository - Protein Structure Prediction

Protein:	ERP4
Organism:	Saccharomyces cerevisiae
Length:	207 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERP4.

Description	E-value	Query Range	Subject Range
gi\|14042242 - gi\|14042242\|dbj\|BAB55166.1\| unnamed protein product [Homo sapiens]	4.0E-54	[7..204]	[17..217]
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1	8.0E-53	[8..203]	[12..225]
gi\|151945644 - gi\|151945644\|gb\|EDN63885.1\| emp24p/erv25p-related protein [Saccharomyces cerevisiae YJM789] ERP4 - Protein with similarity to Emp24p and Erv25p, member of the p24 family involved in ER to Golgi trans... ERP4_YEAST - Protein ERP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERP4 PE=1 SV=1	1.0E-51	[1..207]	[1..207]
TMEDA_RABIT - Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1	4.0E-49	[11..203]	[16..216]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVFTLIAIL FSSSLLTHAF SSNYAPVGIS LPAFTKECLY YDLSSDKDVL VVSYQVLTGG  60
   61 NFEIDFDITA PDGSVIVTER QKKHSDFLLK SFGIGKYTFC LSNNYGTSPK KVEITLEKEK 120
  121 EIVSSHESKE DIIANNAIEE IDRNLNKITK TMDYLRAREW RNMYTVSSTE SRLTWLSLLI 180
  181 MGVMVGISIV QALIIQFFFT SRQKNYV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	75.236572
Match:	PF01105
Description:	emp24/gp25L/p24 family/GOLD

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [138-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEEIDRNLNK ITKTMDYLRA REWRNMYTVS STESRLTWLS LLIMGVMVGI SIVQALIIQF  60
   61 FFTSRQKNYV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits