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View Structure Prediction Details

Protein: TIR2
Organism: Saccharomyces cerevisiae
Length: 251 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIR2.

Description E-value Query
Range
Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
3.0E-42 [46..248] [664..856]
gi|840706 - gi|840706|dbj|BAA09333.1| trans-sialidase [Trypanosoma cruzi]
1.0E-40 [3..248] [687..941]
gi|9695347 - gi|9695347|gb|AAF97432.1|U23947_9 VsaC1 [Mycoplasma pulmonis]
1.0E-35 [5..244] [72..317]
OTOGL_MOUSE - Otogelin OS=Mus musculus GN=Otog PE=1 SV=1
5.0E-35 [48..239] [1565..1784]
gi|15828996 - gi|15828996|ref|NP_326356.1| lipoprotein VSAC (fragment) [Mycoplasma pulmonis UAB CTIP]
gi|14089939, gi|... - pir||E90577 lipoprotein vsaC [imported] - Mycoplasma pulmonis (strain UAB CTIP) (fragment), gi|14089...
4.0E-33 [7..242] [315..556]
gi|11545212 - gi|11545212|gb|AAG37800.1|AF198437_1 hypothetical telomeric SfiI fragment 20 protein 3 [Theileria pa...
1.0E-27 [23..230] [21..256]
SPBPJ4664.02 - glycoprotein
YHU2_SCHPO - Uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02 OS=Schizosaccharomyces pombe (str...
5.0E-26 [2..240] [1868..2113]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYIKIALLA AIAALASAQT QEEIDELNVI LNDVKSNLQE YISLAEDSSS GFSLSSLPSG  60
   61 VLDIGLALAS ATDDSYTTLY SEVDFAAVSK MLTMVPWYSS RLLPELESLL GTSTTAASS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 57.958607
Match: PF00660
Description: Seripauperin and TIP1 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.834 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

Predicted Domain #2
Region A:
Residues: [120-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEASSAATSS AVASSSETTS SAVASSSEAT SSAVASSSEA SSSAATSSAV ASSSEATSST  60
   61 VASSTKAASS TKASSSAVSS AVASSTKASA ISQISDGQVQ ATSTVSEQTE NGAAKAVIGM 120
  121 GAGVMAAAAM LL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle