| Protein: | TRM13 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 476 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRM13.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..476] | [1..476] |
|
|
0.0 | [20..474] | [18..470] |
|
|
0.0 | [49..476] | [32..405] |
|
|
0.0 | [21..475] | [16..390] |
|
Region A: Residues: [1-228] |
1 11 21 31 41 51
| | | | | |
1 MLQDNNGPAV KRAKPSERLQ CEYFMEKKKR RCGMTRSSQN LYCSEHLNLM KKAANSQVHN 60
61 KNGSEAEKER ERVPCPLDPN HTVWADQLKK HLKKCNKTKL SHLNDDKPYY EPGYNGENGL 120
121 LSSSVKIDIT AEHLVQSIEL LYKVFEGESM DELPLRQLNN KLMSLKRFPQ LPSNTKHAVQ 180
181 QSSLIENLVD AGAFERPESL NFIEFGCGRA EFSRYVSLYL LTQLTSLP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [229-476] |
1 11 21 31 41 51
| | | | | |
1 AEHSGSNSNE FVLIDRATNR MKFDKKIKDD FSEIKSNSPS KPISCPSIKR IKIDIRDLKM 60
61 DPILKSTPGD DIQYVCISKH LCGVATDLTL RCIGNSSILH GDDNNGCNPK LKAICIAMCC 120
121 RHVCDYGDYV NRSYVTSLVE KYRAHGSILT YETFFRVLTK LCSWGTCGRK PGTAITDIVN 180
181 VVESFEGAEP YTITIKEREN IGLMARRVID EGRLVYVKEK FTEFNAELIR YVESDVSLEN 240
241 VAMLVYKK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [309-353] |
1 11 21 31 41 51
| | | | | |
1 LCGVATDLTL RCIGNSSILH GDDNNGCNPK LKAICIAMCC RHVCD
|
| Detection Method: | |
| Confidence: | 0.996 |
| Match: | 1iglA |
| Description: | SOLUTION STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR II RELATIONSHIP TO RECEPTOR AND BINDING PROTEIN INTERACTIONS |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [354-476] |
1 11 21 31 41 51
| | | | | |
1 YGDYVNRSYV TSLVEKYRAH GSILTYETFF RVLTKLCSWG TCGRKPGTAI TDIVNVVESF 60
61 EGAEPYTITI KERENIGLMA RRVIDEGRLV YVKEKFTEFN AELIRYVESD VSLENVAMLV 120
121 YKK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
