| Protein: | SKM1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 655 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SKM1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..655] | [1..655] |
|
|
0.0 | [5..654] | [58..791] |
|
|
0.0 | [4..653] | [71..636] |
|
|
0.0 | [4..653] | [71..635] |
|
|
0.0 | [2..641] | [47..686] |
|
|
0.0 | [30..652] | [2..534] |
|
|
0.0 | [30..652] | [2..533] |
|
Region A: Residues: [1-117] |
1 11 21 31 41 51
| | | | | |
1 MKGVKKEGWI SYKVDGLFSF LWQKRYLVLN DSYLAFYKSD KCNEEPVLSV PLTSITNVSR 60
61 IQLKQNCFEI LRATDQKENI SPINSYFYES NSKRSIFIST RTERDLHGWL DAIFAKC
|
| Detection Method: |  |
| Confidence: | 11.96 |
| Match: | 1fhwA |
| Description: | Grp1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [118-206] |
1 11 21 31 41 51
| | | | | |
1 PLLSGVSSPT NFTHKVHVGF DPKVGNFVGV PDSWAKLLQT SEITYDDWNR NSKAVIKALQ 60
61 FYEDYNGLDT MQFNDHLNTS LDLKPLKSP
|
| Detection Method: | |
| Confidence: | 126.29073 |
| Match: | 1f3mA_ |
| Description: | pak1 autoregulatory domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [207-305] |
1 11 21 31 41 51
| | | | | |
1 TRYIINKRTN SIKRSVSRTL RKGKTDSILP VYQSELKPFP RPSDDDYKFT NIEDNKVREE 60
61 GRVHVSKEST ADSQTKQLGK KEQKVIQSHL RRHDNNSTF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
|
Region A: Residues: [306-454] |
1 11 21 31 41 51
| | | | | |
1 RPHRLAPSAP ATKNHDSKTK WHKEDLLELK NNDDSNEIIM KMKTVAIDVN PRPYFQLVEK 60
61 AGQGASGAVY LSKRIKLPQE NDPRFLKSHC HRVVGERVAI KQIRLSEQPK KQLIMNELLV 120
121 MNDSRQENIV NFLEAYIIDD EELWVIMEY
|
| Detection Method: | |
| Confidence: | 959.0103 |
| Match: | 1f3mC_ |
| Description: | pak1 |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [455-655] |
1 11 21 31 41 51
| | | | | |
1 MEGGCLTDIL DAVARSNTGE HSSPLNENQM AYIVKETCQG LKFLHNKKII HRDIKSDNIL 60
61 LNSQGLVKIT DFGFCVELTE KRSKRATMVG TPYWMAPEIV NQKGYDEKVD VWSLGIMLIE 120
121 MIEGEPPYLN EDPLKALYLI ANNGSPKLRH PESVSKQTKQ FLDACLQVNV ESRASVRKLL 180
181 TFEFLSMACS PEQLKVSLKW H
|
| Detection Method: | |
| Confidence: | 959.0103 |
| Match: | 1f3mC_ |
| Description: | pak1 |
| Matching Structure (courtesy of the PDB): |
|
