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View Structure Prediction Details

Protein: IRA2
Organism: Saccharomyces cerevisiae
Length: 3079 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

No multiple sequence alignment data found for IRA2.

Predicted Domain #1
Region A:
Residues: [1-1260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPTKNKKK EHGTDSKSSR MTRTLVNHIL FERILPILPV ESNLSTYSEV EEYSSFISCR  60
   61 SVLINVTVSR DANAMVEGTL ELIESLLQGH EIISDKGSSD VIESILIILR LLSDALEYNW 120
  121 QNQESLHYND ISTHVEHDQE QKYRPKLNSI LPDYSSTHSN GNKHFFHQSK PQALIPELAS 180
  181 KLLESCAKLK FNTRTLQILQ NMISHVHGNI LTTLSSSILP RHKSYLTRHN HPSHCKMIDS 240
  241 TLGHILRFVA ASNPSEYFEF IRKSVQVPVT QTHTHSHSHS HSLPSSVYNS IVPHFDLFSF 300
  301 IYLSKHNFKK YLELIKNLSV TLRKTIYHCL LLHYSAKAIM FWIMARPAEY YELFNLLKDN 360
  361 NNEHSKSLNT LNHTLFEEIH STFNVNSMIT TNQNAHQGSS SPSSSSPSSP PSSSSSDNNN 420
  421 QNIIAKSLSR QLSHHQSYIQ QQSERKLHSS WTTNSQSSTS LSSSTSNSTT TDFSTHTQPG 480
  481 EYDPSLPDTP TMSNITISAS SLLSQTPTPT TQLQQRLNSA AAAAAAAASP SNSTPTGYTA 540
  541 EQQSRASYDA HKTGHTGKDY DEHFLSVTRL DNVLELYTHF DDTEVLPHTS VLKFLTTLTM 600
  601 FDIDLFNELN ATSFKYIPDC TMHRPKERTS SFNNTAHETG SEKTSGIKHI TQGLKKLTSL 660
  661 PSSTKKTVKF VKMLLRNLNG NQAVSDVALL DTMRALLSFF TMTSAVFLVD RNLPSVLFAK 720
  721 RLIPIMGTNL SVGQDWNSKI NNSLMVCLKK NSTTFVQLQL IFFSSAIQFD HELLLARLSI 780
  781 DTMANNLNMQ KLCLYTEGFR IFFDIPSKKE LRKAIAVKIS KFFKTLFSII ADILLQEFPY 840
  841 FDEQITDIVA SILDGTIINE YGTKKHFKGS SPSLCSTTRS RSGSTSQSSM TPVSPLGLDT 900
  901 DICPMNTLSL VGSSTSRNSD NVNSLNSSPK NLSSDPYLSH LVAPRARHAL GGPSSIIRNK 960
  961 IPTTLTSPPG TEKSSPVQRP QTESISATPM AITNSTPLSS AAFGIRSPLQ KIRTRRYSDE1020
 1021 SLGKFMKSTN NYIQEHLIPK DLNEATLQDA RRIMINIFSI FKRPNSYFII PHNINSNLQW1080
 1081 VSQDFRNIMK PIFVAIVSPD VDLQNTAQSF MDTLLSNVIT YGESDENISI EGYHLLCSYT1140
 1141 VTLFAMGLFD LKINNEKRQI LLDITVKFMK VRSHLAGIAE ASHHMEYISD SEKLTFPLIM1200
 1201 GTVGRALFVS LYSSQQKIEK TLKIAYTEYL SAINFHERNI DDADKTWVHN IEFVEAMCHD1260
 1261 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [1261-1559]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYTTSGSIAF QRRTRNNILR FATIPNAILL DSMRMIYKKW HTYTHSKSLE KQERNDFRNF  60
   61 AGILASLSGI LFINKKILQE MYPYLLDTVS ELKKNIDSFI SKQCQWLNYP DLLTRENSRD 120
  121 ILSVELHPLS FNLLFNNLRL KLKELACSDL SIPENESSYV LLEQIIKMLR TILGRDDDNY 180
  181 VMMLFSTEIV DLIDLLTDEI KKIPAYCPKY LKAIIQMTKM FSALQHSEVN LGVKNHFHVK 240
  241 NKWLRQITDW FQVSIAREYD FENLSKPLKE MDLVKRDMDI LYIDTAIEAS TAIAYLTRH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [1560-1665]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFLEIPPAAS DPELSRSRSV IFGFYFNILM KGLEKSSDRD NYPVFLRHKM SVLNDNVILS  60
   61 LTNLSNTNVD ASLQFTLPMG YSGNRNIRNA FLEVFINIVT NYRTYT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [1666-1719]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKTDLGKLEA ADKFLRYTIE HPQLSSFGAA VCPASDIDAY AAGLINAFET RNAT

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [1935-2001]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDPTPIAFDY QFLHSFVYLY GLEVRRNVLN EAKHDDGDID GDDFYKTTFL LIDDVLGQLG  60
   61 QPKMEFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 312.457575
Match: 1nf1A
Description: GAP related domain of neurofibromin
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [1720-1934]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HIVVAQLIKN EIEKSSRPTD ILRRNSCATR SLSMLARSKG NEYLIRTLQP LLKKIIQNRD  60
   61 FFEIEKLKPE DSDAERQIEL FVKYMNELLE SISNSVSYFP PPLFYICQNI YKVACEKFPD 120
  121 HAIIAAGSFV FLRFFCPALV SPDSENIIDI SHLSEKRTFI SLAKVIQNIA NGSENFSRWP 180
  181 ALCSQKDFLK ECSDRIFRFL AELCRTDRTI DIQVR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 312.457575
Match: 1nf1A
Description: GAP related domain of neurofibromin
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [2002-2530]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEIPIYIREH MDDYPELYEF MNRHAFRNIE TSTAYSPSVH ESTSSEGIPI ITLTMSNFSD  60
   61 RHVDIDTVAY KFLQIYARIW TTKHCLIIDC TEFDEGGLDM RKFISLVMGL LPEVAPKNCI 120
  121 GCYYFNVNET FMDNYGKCLD KDNVYVSSKI PHYFINSNSD EGLMKSVGIT GQGLKVLQDI 180
  181 RVSLHDITLY DEKRNRFTPV SLKIGDIYFQ VLHETPRQYK IRDMGTLFDV KFNDVYEISR 240
  241 IFEVHVSSIT GVAAEFTVTF QDERRLIFSS PKYLEIVKMF YYAQIRLESE YEMDNNSSTS 300
  301 SPNSNNKDKQ QKERTKLLCH LLLVSLIGLF DESKKMKNSS YNLIAATEAS FGLNFGSHFH 360
  361 RSPEVYVPED TTTFLGVIGK SLAESNPELT AYMFIYVLEA LKNNVIPHVY IPHTICGLSY 420
  421 WIPNLYQHVY LADDEEGPEN ISHIFRILIR LSVRETDFKA VYMQYVWLLL LDDGRLTDII 480
  481 VDEVINHALE RDSENRDWKK TISLLTVLPT TEVANNIIQK ILAKIRSFL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [2531-2877]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSLKLEAMTQ SWSELTILVK ISIHVFFETS LLVQMYLPEI LFIVSLLIDV GPRELRSSLH  60
   61 QLLMNVCHSL AINSALPQDH RNNLDEISDI FAHQKVKFMF GFSEDKGRIL QIFSASSFAS 120
  121 KFNILDFFIN NILLLMEYSS TYEANVWKTR YKKYVLESVF TSNSFLSARS IMIVGIMGKS 180
  181 YITEGLCKAM LIETMKVIAE PKITDEHLFL AISHIFTYSK IVEGLDPNLD LMKHLFWFST 240
  241 LFLESRHPII FEGALLFVSN CIRRLYMAQF ENESETSLIS TLLKGRKFAH TFLSKIENLS 300
  301 GIVWNEDNFT HILIFIINKG LSNPFIKSTA FDFLKMMFRN SYFEHQI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [2878-3079]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQKSDHYLCY MFLLYFVLNC NQFEELLGDV DFEGEMVNIE NKNTIPKILL EWLSSDNENA  60
   61 NITLYQGAIL FKCSVTDEPS RFRFALIIRH LLTKKPICAL RFYSVIRNEI RKISAFEQNS 120
  121 DCVPLAFDIL NLLVTHSESN SLEKLHEESI ERLTKRGLSI VTSSGIFAKN SDMMIPLDVK 180
  181 PEDIYERKRI MTMILSRMSC SA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle