YRC Public Data Repository - Protein Structure Prediction

Protein:	EMI5
Organism:	Saccharomyces cerevisiae
Length:	162 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EMI5.

Description	E-value	Query Range	Subject Range
SDHF2_YEAST - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 20... EMI5 - Subunit of succinate dehydrogenase, which couples succinate oxidation to ubiquinone reduction; requi...	9.0E-64	[1..162]	[1..162]
gi\|12850820 - gi\|12850820\|dbj\|BAB28863.1\| unnamed protein product [Mus musculus]	9.0E-34	[33..158]	[30..156]
SDHAF2 - succinate dehydrogenase complex assembly factor 2	8.0E-33	[33..158]	[32..158]
IPI00978638, tr\|... - Uncharacterized protein OS=Homo sapiens PE=4 SV=1, IPI:IPI00978638.2\|TREMBL:F5GYJ5\|ENSEMBL:ENSP00000... gi\|109105927, gi... - gi\|109105927\|ref\|XP_001082231.1\| PREDICTED: similar to CG14757-PA isoform 2 [Macaca mulatta], gi\|109... gi\|9929929 - gi\|9929929\|dbj\|BAB12121.1\| hypothetical protein [Macaca fascicularis]	7.0E-32	[33..158]	[20..146]
SPAC12B10.06c - DUF339 family protein SDHF2_SCHPO - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ...	4.0E-29	[48..158]	[31..138]
gi\|17945654 - gi\|17945654\|gb\|AAL48877.1\| RE29446p [Drosophila melanogaster]	3.0E-27	[57..158]	[56..156]
gi\|85102955 - gi\|85102955\|ref\|XP_961429.1\| hypothetical protein NCU01343 [Neurospora crassa OR74A] gi\|28922974, gi\|... - gi\|32412712\|ref\|XP_326836.1\| hypothetical protein ( (AL451017) conserved hypothetical protein [Neuro...	1.0E-26	[51..153]	[62..160]
CE22606 - status:Confirmed UniProt:Q9NA72 protein_id:CAB55034.1	1.0E-24	[52..149]	[19..115]
gi\|25526080 - pir\|\|AF3595 hypothetical cytosolic protein BMEII0687 [imported] - Brucella melitensis (strain 16M) gi\|17984873, gi\|... - gi\|17989032\|ref\|NP_541665.1\| putative cytoplasmic protein [Brucella melitensis 16M], gi\|17984873\|gb\|...	4.0E-24	[59..149]	[8..96]
gi\|25519968, gi\|... - pir\|\|AD2795 conserved hypothetical protein Atu1779 [imported] - Agrobacterium tumefaciens (strain C5... gi\|17935672, gi\|... - gi\|17935672\|ref\|NP_532462.1\| hypothetical protein Atu1779 [Agrobacterium tumefaciens str. C58], gi\|1...	1.0E-23	[57..145]	[9..93]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHNMFPALTK TLSLQGYKII NSQTGSAAWS CGRRWFSSDK DDHDDVVTRI KIAPIKRTNE  60
   61 PLDKKRARLI YQSRKRGILE TDLLLSGFAA KYLKKMNEEE LEEYDSLLNE LDWDIYYWAT 120
  121 KNFKTSPLPD KWANSKLLKQ LQEFSENKEK EILSMPDLSK YQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.080922
Match:	PF03937
Description:	TPR repeat region

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits