Protein: | MDM12 |
Organism: | Saccharomyces cerevisiae |
Length: | 271 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDM12.
Description | E-value | Query Range |
Subject Range |
|
494.0 | [0..1] | [271..1] |
|
382.0 | [0..1] | [265..1] |
|
292.0 | [0..1] | [268..1] |
|
263.0 | [0..1] | [168..1] |
|
252.0 | [0..1] | [269..1] |
|
240.0 | [0..1] | [266..1] |
|
150.0 | [0..1] | [263..1] |
|
139.0 | [0..74] | [264..197] |
|
135.0 | [0..1] | [264..1] |
|
128.0 | [0..117] | [262..241] |
Region A: Residues: [1-181] |
1 11 21 31 41 51 | | | | | | 1 MSFDINWSTL ESDNRLNDLI RKHLNSYLQN TQLPSYVSNL RVLDFDLGKV GPAITLKEIT 60 61 DPLDEFYDSI REEADQETEE NNDNKEDSEH ICPDRTIANH EGPKDDFEAP VVMPSPNDIQ 120 121 FLLEVEYKGD LLVTIGADLV LNYPVEKFMT LPVKLSISDI GLHSLCIVAC LSKQLFLSFL 180 181 C |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.456 | N/A | N/A | d.359.1 | Description not found. |
View | Download | 0.421 | N/A | N/A | c.114.1 | YchN-like |
View | Download | 0.401 | N/A | N/A | d.110.2 | GAF domain-like |
View | Download | 0.376 | N/A | N/A | d.129.3 | Bet v1-like |
View | Download | 0.371 | N/A | N/A | d.129.3 | Bet v1-like |
View | Download | 0.294 | N/A | N/A | a.26.1 | 4-helical cytokines |
View | Download | 0.289 | N/A | N/A | a.1.1 | Globin-like |
View | Download | 0.254 | N/A | N/A | a.1.1 | Globin-like |
View | Download | 0.215 | N/A | N/A | a.118.1 | ARM repeat |
View | Download | 0.205 | N/A | N/A | d.109.1 | Actin depolymerizing proteins |
Region A: Residues: [182-271] |
1 11 21 31 41 51 | | | | | | 1 DVSDPALDDN QTVLDPKGPI LAATKPLERI SIVRSMKIET EIGEQYQGQG SVLRSVGELE 60 61 QFLFTIFKDF LRKELAWPSW INLDFNDGDE |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.878 | c.55.1 | Actin-like ATPase domain |
View | Download | 0.744 | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
View | Download | 0.710 | d.58.20 | NAD-binding domain of HMG-CoA reductase |
View | Download | 0.663 | f.17.1 | F1F0 ATP synthase subunit C |
View | Download | 0.660 | f.17.1 | F1F0 ATP synthase subunit C |
View | Download | 0.655 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.655 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.636 | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |