YRC Public Data Repository - Protein Structure Prediction

Protein:	YNR071C
Organism:	Saccharomyces cerevisiae
Length:	342 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNR071C.

Description	E-value	Query Range	Subject Range
gi\|207341522 - gi\|207341522\|gb\|EDZ69554.1\| YNR071Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151944599 - gi\|151944599\|gb\|EDN62877.1\| conserved protein [Saccharomyces cerevisiae YJM789] YN9A_YEAST - Uncharacterized isomerase YNR071C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR071... YNR071C - Putative protein of unknown function	3.0E-93	[1..342]	[1..342]
GALM_PIG - Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1	2.0E-91	[6..342]	[15..341]
gi\|15643051, gi\|... - gi\|4980780\|gb\|AAD35370.1\|AE001710_5 aldose 1-epimerase [Thermotoga maritima MSB8], gi\|15643051\|ref\|N... gi\|7445539 - pir\|\|H72395 probable aldose 1-epimerase (EC 5.1.3.3) - Thermotoga maritima (strain MSB8)	2.0E-91	[4..342]	[16..354]
gi\|220963594, gi... - gi\|221234422\|ref\|YP_002516858.1\| aldose 1-epimerase [Caulobacter crescentus NA1000], gi\|220963594\|gb... gi\|25307128 - pir\|\|C87425 aldose 1-epimerase [imported] - Caulobacter crescentus gi\|13422779, gi\|... - gi\|16125667\|ref\|NP_420231.1\| aldose 1-epimerase [Caulobacter crescentus CB15], gi\|13422779\|gb\|AAK233...	1.0E-90	[5..342]	[33..376]
gi\|15242223, gi\|... - gi\|91806860\|gb\|ABE66157.1\| aldose 1-epimerase family protein [Arabidopsis thaliana], gi\|7671483\|emb\|...	4.0E-90	[3..342]	[153..488]
gi\|161614994, gi... - gi\|161614994\|ref\|YP_001588959.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Par... gi\|205324641, gi... - gi\|205324641\|gb\|EDZ12480.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Saintp... gi\|238913333 - gi\|238913333\|ref\|ZP_04657170.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Tenn... gi\|62126974, gi\|... - gi\|62179341\|ref\|YP_215758.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Cholera... gi\|205271813, gi... - gi\|205352032\|ref\|YP_002225833.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Gal... lcl\|NC_016856.1_... - [gene=galM] [protein=aldose 1-epimerase] [protein_id=YP_005236492.1] [location=complement(837679..83... gi\|197262342, gi... - gi\|197262342\|ref\|ZP_03162416.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Sa... gi\|199603460, gi... - gi\|200391015\|ref\|ZP_03217626.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Vi... gi\|194446021, gi... - gi\|194446021\|ref\|YP_002040009.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar N... gi\|194456599, gi... - gi\|194470235\|ref\|ZP_03076219.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Ke... gi\|16764137, gi\|... - gi\|16764137\|ref\|NP_459752.1\| aldose 1-epimerase [Salmonella typhimurium LT2], gi\|16419278\|gb\|AAL1971... gi\|168263735, gi... - gi\|205347833\|gb\|EDZ34464.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Hadar ... gi\|168466357, gi... - gi\|195630990\|gb\|EDX49576.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Newpor... gi\|167994419, gi... - gi\|205327694\|gb\|EDZ14458.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar 4,[5],... gi\|168230655, gi... - gi\|205334814\|gb\|EDZ21578.1\| galactose mutarotase [Salmonella enterica subsp. enterica serovar Kentuc...	7.0E-90	[4..340]	[9..343]
gi\|213582687 - gi\|213582687\|ref\|ZP_03364513.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typh... gi\|213427698 - gi\|213427698\|ref\|ZP_03360448.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typh... gi\|214001891 - gi\|214001891\|ref\|ZP_03412626.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typh... gi\|213854587 - gi\|213854587\|ref\|ZP_03382827.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typh... gi\|16759698 - gi\|16759698\|ref\|NP_455315.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typhi s... gi\|16501991, gi\|... - gi\|25307144\|pir\|\|AC0594 aldose 1-epimerase (mutarotase) [imported] - Salmonella enterica subsp. ente... gi\|29142529, gi\|... - gi\|29142529\|ref\|NP_805871.1\| aldose 1-epimerase [Salmonella enterica subsp. enterica serovar Typhi s...	1.0E-89	[4..340]	[9..343]
gi\|75511358, gi\|... - gi\|75511358\|ref\|ZP_00734043.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli 5... gi\|124531873, gi... - gi\|124531873\|ref\|ZP_01701972.1\| galactose mutarotase [Escherichia coli B], gi\|124498294\|gb\|EAY45812.... gi\|170020906, gi... - gi\|170020906\|ref\|YP_001725860.1\| aldose 1-epimerase [Escherichia coli ATCC 8739], gi\|169755834\|gb\|AC... GALM_ECOLI - Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase) - Escherichia coli gi\|81244587, gi\|... - gi\|82543176\|ref\|YP_407123.1\| aldose 1-epimerase [Shigella boydii Sb227], gi\|81244587\|gb\|ABB65295.1\| ... gi\|170681719, gi... - gi\|170681719\|ref\|YP_001742859.1\| galactose mutarotase [Escherichia coli SMS-3-5], gi\|170519437\|gb\|AC... gi\|170080416, gi... - gi\|170080416\|ref\|YP_001729736.1\| galactose-1-epimerase (mutarotase) [Escherichia coli str. K-12 subs... gi\|218360044, gi... - gi\|218553276\|ref\|YP_002386189.1\| aldose 1-epimerase [Escherichia coli IAI1], gi\|218360044\|emb\|CAQ975... gi\|89107607, gi\|... - gi\|89107607\|ref\|AP_001387.1\| galactose-1-epimerase [Escherichia coli str. K-12 substr. W3110], gi\|16... gi\|209918000, gi... - gi\|209918000\|ref\|YP_002292084.1\| aldose 1-epimerase [Escherichia coli SE11], gi\|209911259\|dbj\|BAG763... EG11698 - aldose 1-epimerase; type-1 mutarotase; galactose mutarotase / Aldose 1-epimerase, type-1 mutarotase;... gi\|110804625, gi... - gi\|110804625\|ref\|YP_688145.1\| aldose 1-epimerase [Shigella flexneri 5 str. 8401], gi\|110614173\|gb\|AB... gi\|218694173, gi... - gi\|218694173\|ref\|YP_002401840.1\| aldose 1-epimerase [Escherichia coli 55989], gi\|218350905\|emb\|CAU96... gi\|194439766, gi... - gi\|83584859\|ref\|ZP_00923518.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli 1... gi\|187733828, gi... - gi\|75175248\|ref\|ZP_00695558.1\| COG2017: Galactose mutarotase and related enzymes [Shigella boydii BS... gi\|157157316, gi... - gi\|75189770\|ref\|ZP_00703037.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli E... gi\|157065911, gi... - gi\|75194909\|ref\|ZP_00704979.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli H... gi\|194429691, gi... - gi\|75209075\|ref\|ZP_00709333.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli B... gi\|75228377, gi\|... - gi\|75228377\|ref\|ZP_00715025.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli B... gi\|75235773, gi\|... - gi\|75235773\|ref\|ZP_00719928.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli E... gi\|192926798, gi... - gi\|75256340\|ref\|ZP_00728010.1\| COG2017: Galactose mutarotase and related enzymes [Escherichia coli E... GALM_SHIFL - Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1 gi\|24050786, gi\|... - gi\|24111975\|ref\|NP_706485.1\| aldose 1-epimerase [Shigella flexneri 2a str. 301], gi\|24050786\|gb\|AAN4... gi\|30040332, gi\|... - gi\|30062088\|ref\|NP_836259.1\| aldose 1-epimerase [Shigella flexneri 2a str. 2457T], gi\|30040332\|gb\|AA... EG11698 - aldose 1-epimerase; type-1 mutarotase; galactose mutarotase / Aldose 1-epimerase, type-1 mutarotase;... gi\|238900014, gi... - gi\|238900014\|ref\|YP_002925810.1\| galactose-1-epimerase (mutarotase) [Escherichia coli BW2952], gi\|23... gi\|253972720, gi... - gi\|254160819\|ref\|YP_003043927.1\| galactose-1-epimerase (mutarotase) [Escherichia coli B str. REL606]...	4.0E-89	[4..340]	[9..343]
gi\|209160006, gi... - gi\|209398606\|ref\|YP_002269384.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|208738041, gi... - gi\|208822556\|ref\|ZP_03262875.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|208816066, gi... - gi\|208816066\|ref\|ZP_03257245.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208727284, gi... - gi\|208807483\|ref\|ZP_03249820.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|217324497, gi... - gi\|217324497\|ref\|ZP_03440581.1\| galactose mutarotase [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|187768155, gi... - gi\|187768155\|gb\|EDU31999.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4196], gi\|16877649... gi\|189363358, gi... - gi\|189363358\|gb\|EDU81777.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4486], gi\|16876720... gi\|168763346, gi... - gi\|189366439\|gb\|EDU84855.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4501], gi\|16876334... gi\|189355837, gi... - gi\|189355837\|gb\|EDU74256.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4401], gi\|16875704... gi\|195936744 - gi\|195936744\|ref\|ZP_03082126.1\| aldose 1-epimerase [Escherichia coli O157:H7 str. EC4024] gi\|254591307, gi... - gi\|254791907\|ref\|YP_003076744.1\| galactose-1-epimerase (mutarotase) [Escherichia coli O157:H7 str. T... gi\|168800812, gi... - gi\|189376935\|gb\|EDU95351.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC508], gi\|168800812... gi\|189373136, gi... - gi\|189373136\|gb\|EDU91552.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC869], gi\|168786915... gi\|168779244, gi... - gi\|189003134\|gb\|EDU72120.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4076], gi\|16877924... gi\|209776310, gi... - pir\|\|H90726 galactose-1-epimerase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509... gi\|13360243, gi\|... - gi\|15830038\|ref\|NP_308811.1\| galactose-1-epimerase [Escherichia coli O157:H7], gi\|13360243\|dbj\|BAB34... gi\|168750248, gi... - gi\|188015536\|gb\|EDU53658.1\| galactose mutarotase [Escherichia coli O157:H7 str. EC4113], gi\|16875024... gi\|13360243, gi\|... - gi\|15830038\|ref\|NP_308811.1\| aldose 1-epimerase [Escherichia coli O157:H7 str. Sakai], gi\|13360243\|d...	4.0E-88	[4..340]	[9..343]

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Predicted Domain #1

Region A:
Residues: [1-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSNGDNKY GVITIGDEKK FQATIAPLGA TLVDLKVNGQ SVVQGYSNVQ DYLTDGNMMG  60
   61 ATVGRYANRI AKGVFSLDDG PHKLTVNNCG NTNHSSISSL NLKQYKASPV ENPSKGVYVV 120
  121 EFKLLDDHTQ PNPNEFPGDL EVTVKYTLNV AEMTLDMEYQ AQLVRGDATP INMTNHSYFN 180
  181 LNKVKSEKSI RGTEVKVCSN KSLEVTEGAL LPTGKIIERN IATFDSTKPT VLHEDTPVFD 240
  241 CTFIIDANKD LKTTDSVSVN KLVPVFKAYH PESHIKFEVS TTEPTVHLYT GDNLCGKFVP 300
  301 RSGFAVQQGR YVDAINRDEW RGCVLLKRGE VYTSKTQYKF DI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	167.37734
Match:	1l7jA_
Description:	Galactose mutarotase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits