| Protein: | FPK1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 893 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FPK1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..893] | [1..893] |
|
|
0.0 | [10..838] | [337..1098] |
|
|
0.0 | [54..864] | [9..880] |
|
|
0.0 | [71..873] | [116..882] |
|
|
0.0 | [71..873] | [56..823] |
|
|
0.0 | [142..791] | [251..895] |
|
Region A: Residues: [1-307] |
1 11 21 31 41 51
| | | | | |
1 MAGHHHEHEQ ERDHEQEHEH DSLQRPTTGS ERTRSISFSK LLTRSWKRNA SSSNNMSVSS 60
61 VNLYSDPENS RESDHNNSGS EGQSSRFSKL KSMFQSGNSS KNASAHNSSQ SSLEGDSASS 120
121 SSKLRYVKPM TSVANASPAS PPLSPTIPET DVLQTPKMVH IDQHEHEREH SNCGSPIMLS 180
181 SSSFSPTVAR TGTGRRRSPS TPIMPSQNSN NSSSTSAIRP NNYRHHSGSQ GFSSNNPFRE 240
241 RAGTVRSSNP YFAYQGLPTH AMSSHDLDEG FQPYANGSGI HFLSTPTSKT NSLTNTKNLS 300
301 NLSLNEI
|
| Detection Method: |  |
| Confidence: | 14.24 |
| Match: | 1k83A |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [308-426] |
1 11 21 31 41 51
| | | | | |
1 KENEEVQEFN NEDFFFHDIP KDLSLKDTLN GSPSRGSSKS PTITQTFPSI IVGFDNEYEE 60
61 DNNNDKHDEK EEQQTTTDNK TRNLSPTKQN GKATHPRIKI PLRRAASEPN GLQLASATS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.354 | d.93.1 | SH2 domain |
| View | Download | 0.266 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.243 | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
|
Region A: Residues: [427-545] |
1 11 21 31 41 51
| | | | | |
1 PTSSSARKTS GSSNINDKIP GQSVPPPNSF FPQEPSPKIS DFPEPRRSRR LRTKSFSNKF 60
61 QDIMVGPQSF EKIRLLGQGD VGKVFLVREK KTNRVYALKV LSKDEMIKRN KIKRVLTEQ
|
|
Region B: Residues: [559-575] |
1 11 21 31 41 51
| | | | | |
1 LYHSFQSEDY LYLCMEY
|
|
Region C: Residues: [796-814] |
1 11 21 31 41 51
| | | | | |
1 LSEDGYDFAK LSSNKKRQT
|
| Detection Method: | |
| Confidence: | 712.0103 |
| Match: | 1fotA_ |
| Description: | cAMP-dependent PK, catalytic subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [546-558] |
1 11 21 31 41 51
| | | | | |
1 EILATSNHPF IVT
|
|
Region B: Residues: [576-795] |
1 11 21 31 41 51
| | | | | |
1 CMGGEFFRAL QTRKTKCICE DDARFYASEV TAALEYLHLL GFIYRDLKPE NILLHQSGHI 60
61 MLSDFDLSIQ AKDSKVPVVK GSAQSTLVDT KICSDGFRTN SFVGTEEYIA PEVIRGNGHT 120
121 AAVDWWTLGI LIYEMLFGFT PFKGDNTNET FTNILKNEVS FPNNNEISRT CKDLIKKLLT 180
181 KNESKRLGCK MGAADVKKHP FFKKVQWSLL RNQEPPLIPV
|
| Detection Method: | |
| Confidence: | 712.0103 |
| Match: | 1fotA_ |
| Description: | cAMP-dependent PK, catalytic subunit |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [815-893] |
1 11 21 31 41 51
| | | | | |
1 SQDSHKHLDE QEKNMFEERV EYDDEVSEDD PFHDFNSMSL MEQDNNSMIY GNTNSYGKIA 60
61 YTPNSNRSRS NSHRTFFKR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.396 | b.38.1 | Sm-like ribonucleoproteins |
| View | Download | 0.359 | b.34.1 | C-terminal domain of transcriptional repressors |
| View | Download | 0.432 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.357 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.534 | b.38.2 | YhbC-like, C-terminal domain |
| View | Download | 0.339 | a.60.11 | Hypothetical protein YjbJ |
| View | Download | 0.309 | b.55.1 | PH domain-like |
| View | Download | 0.307 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.286 | b.1.2 | Fibronectin type III |
| View | Download | 0.283 | b.55.1 | PH domain-like |
| View | Download | 0.261 | a.74.1 | Cyclin-like |
| View | Download | 0.249 | b.55.1 | PH domain-like |
| View | Download | 0.249 | a.3.1 | Cytochrome c |
| View | Download | 0.244 | c.51.3 | B12-dependend dehydatases associated subunit |
| View | Download | 0.222 | b.55.1 | PH domain-like |
| View | Download | 0.220 | b.1.1 | Immunoglobulin |
| View | Download | 0.220 | b.38.1 | Sm-like ribonucleoproteins |
