YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL50
Organism:	Saccharomyces cerevisiae
Length:	139 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL50.

Description	E-value	Query Range	Subject Range
RM50_YEAST - 54S ribosomal protein L50, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... MRPL50 - Mitochondrial ribosomal protein of the large subunit, not essential for mitochondrial translation gi\|190408980 - gi\|190408980\|gb\|EDV12245.1\| 60S ribosomal protein L50, mitochondrial precursor [Saccharomyces cerevi...	2.0E-66	[1..139]	[1..139]
gi\|4139230 - gi\|4139230\|gb\|AAD04176.1\| mismatch repair protein [Arabidopsis thaliana]	0.002	[49..120]	[455..531]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHCTQVCLS ALTKRTHRVK VQVLKDFPRF QLYKGQVANV KPSLMRNYLH NFNGAKYILS  60
   61 EEHDINTELL KQYQTLEAKL EEDHQQLSKR HETEVQKNME LRKESVFGHK KEEKPKEEKK 120
  121 GLLDSGITIE EVKIPGLDI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.334	0.904	structural constituent of ribosome	a.156.1	S13-like H2TH domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits