YRC Public Data Repository - Protein Structure Prediction

Protein:	AIM38
Organism:	Saccharomyces cerevisiae
Length:	224 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AIM38.

Description	E-value	Query Range	Subject Range
AIM38 - Putative protein of unknown function; non-tagged protein is detected in purified mitochondria; may i... RCF2_YEAST - Respiratory supercomplex factor 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S... gi\|151944546 - gi\|151944546\|gb\|EDN62824.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|207341580 - gi\|207341580\|gb\|EDZ69594.1\| YNR018Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408983 - gi\|190408983\|gb\|EDV12248.1\| mitochondrial protein [Saccharomyces cerevisiae RM11-1a]	7.0E-92	[1..224]	[1..224]
RCF2_SCHPO - Respiratory supercomplex factor 2 homolog C1565.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... SPAC1565.01 - conserved fungal protein	8.0E-73	[1..203]	[1..214]
gi\|11991520 - gi\|11991520\|emb\|CAC19665.1\| hypothetical protein [Candida albicans]	5.0E-65	[1..160]	[20..178]
gi\|19309405, gi\|... - gi\|41581303\|emb\|CAE47952.1\| hypothetical protein, conserved [Aspergillus fumigatus], gi\|19309405\|emb...	3.0E-64	[1..204]	[1..196]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILTQDEIE AHRSHTLKGG IEGALAGFAI SAIIFKVLPR RYPKFKPSTL TWSIKTALWI  60
   61 TPPTVLTAIC AEEASNNFDA TMYGSGSSSE DALDEHRRWK SLSTKDKFVE GLSNNKYKII 120
  121 TGAWAASLYG SWVIVNKDPI MTKAQKIVQA RMYAQFITVG LLLASVGLSM YENKLHPNKQ 180
  181 KVNEMRRWEN ALRVAEEEER LEKEGRRTGY VSNEERINSK IFKS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits