YRC Public Data Repository - Protein Structure Prediction

Protein:	ATO2
Organism:	Saccharomyces cerevisiae
Length:	282 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATO2.

Description	E-value	Query Range	Subject Range
gi\|207341596 - gi\|207341596\|gb\|EDZ69605.1\| YNR002Cp-like protein [Saccharomyces cerevisiae AWRI1631] ATO2 - Putative transmembrane protein involved in export of ammonia, a starvation signal that promotes cell... gi\|190408996 - gi\|190408996\|gb\|EDV12261.1\| transmembrane protein [Saccharomyces cerevisiae RM11-1a] ATO2_YEAST - Ammonia transport outward protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATO2... gi\|151944531 - gi\|151944531\|gb\|EDN62809.1\| ammonia (ammonium) transport outward [Saccharomyces cerevisiae YJM789]	0.0	[1..282]	[1..282]
GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GPR1 PE=1 SV=3 GPR1_YARLI - Glyoxylate pathway regulator OS=Yarrowia lipolytica GN=GPR1 PE=1 SV=3	2.0E-85	[28..275]	[16..265]
MUG86_SCHPO - Meiotically up-regulated gene 86 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=m... mug86 - acetate transporter	4.0E-63	[66..269]	[70..277]
gi\|108810505, gi... - gi\|229900694\|ref\|ZP_04515818.1\| conserved inner membrane protein associated with acetate transport [... gi\|22127581, gi\|... - gi\|22127581\|ref\|NP_671004.1\| hypothetical protein y3707 [Yersinia pestis KIM], gi\|21960688\|gb\|AAM872... gi\|25331232 - pir\|\|AH0057 probable membrane protein YPO0467 [imported] - Yersinia pestis (strain CO92) gi\|165936593, gi... - gi\|89102679\|ref\|ZP_01175295.1\| COG1584: Predicted membrane protein [Yersinia pestis biovar Orientali... gi\|165920813, gi... - gi\|165927351\|ref\|ZP_02223183.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Orientalis st... gi\|16120796, gi\|... - gi\|218927664\|ref\|YP_002345539.1\| hypothetical protein YPO0467 [Yersinia pestis CO92], gi\|16120796\|re... gi\|108810051, gi... - gi\|108810051\|ref\|YP_653967.1\| hypothetical protein YPA_4061 [Yersinia pestis Antiqua], gi\|108781964\|... gi\|152962063, gi... - gi\|77631596\|ref\|ZP_00794182.1\| COG1584: Predicted membrane protein [Yersinia pseudotuberculosis IP 3... gi\|149289905, gi... - gi\|150260497\|ref\|ZP_01917225.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149289905\|... gi\|145600419, gi... - gi\|145600419\|ref\|YP_001164495.1\| hypothetical protein YPDSF_3164 [Yersinia pestis Pestoides F], gi\|1... gi\|229836950, gi... - gi\|229836950\|ref\|ZP_04457115.1\| conserved inner membrane protein associated with acetate transport [... gi\|229840354, gi... - gi\|229840354\|ref\|ZP_04460513.1\| conserved inner membrane protein associated with acetate transport [... gi\|229842434, gi... - gi\|229842434\|ref\|ZP_04462589.1\| conserved inner membrane protein associated with acetate transport [... gi\|166211974, gi... - gi\|166211974\|ref\|ZP_02238009.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Antiqua str. ... gi\|165992017, gi... - gi\|166008678\|ref\|ZP_02229576.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Antiqua str. ... gi\|166963225, gi... - gi\|167419231\|ref\|ZP_02310984.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Orientalis st... gi\|167401655, gi... - gi\|167401655\|ref\|ZP_02307149.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Antiqua str. ... gi\|167468975 - gi\|167468975\|ref\|ZP_02333679.1\| gpr1/fun34/yaaH family protein [Yersinia pestis FV-1] gi\|167426051, gi... - gi\|167426051\|ref\|ZP_02317804.1\| gpr1/fun34/yaaH family protein [Yersinia pestis biovar Mediaevalis s... gi\|162421810, gi... - gi\|77635670\|ref\|ZP_00797752.1\| COG1584: Predicted membrane protein [Yersinia pestis Angola], gi\|1624... gi\|170025810, gi... - gi\|170025810\|ref\|YP_001722315.1\| hypothetical protein YPK_3595 [Yersinia pseudotuberculosis YPIII], ...	3.0E-52	[84..263]	[4..176]
gi\|213426527 - gi\|213426527\|ref\|ZP_03359277.1\| hypothetical protein SentesTyphi_13475 [Salmonella enterica subsp. e... gi\|213581761 - gi\|213581761\|ref\|ZP_03363587.1\| hypothetical protein SentesTyph_11384 [Salmonella enterica subsp. en... gi\|16759002 - gi\|16759002\|ref\|NP_454619.1\| hypothetical protein STY0009 [Salmonella enterica subsp. enterica serov... gi\|214001210 - gi\|214001210\|ref\|ZP_03411945.1\| hypothetical protein Salmonellentericaenterica_12140 [Salmonella ent... gi\|224466374, gi... - gi\|224581847\|ref\|YP_002635645.1\| hypothetical protein SPC_0009 [Salmonella enterica subsp. enterica ... gi\|194404887, gi... - gi\|194446224\|ref\|YP_002039236.1\| membrane protein, GPR1/FUN34/yaaH family [Salmonella enterica subsp... lcl\|NC_016856.1_... - [gene=yaaH] [protein=hypothetical protein] [protein_id=YP_005235642.1] [location=complement(9376..99... gi\|197240838, gi... - gi\|197262583\|ref\|ZP_03162657.1\| membrane protein, GPR1/FUN34/yaaH family [Salmonella enterica subsp.... gi\|199604474, gi... - gi\|200387376\|ref\|ZP_03213988.1\| membrane protein, GPR1/FUN34/yaaH family [Salmonella enterica subsp.... gi\|213161466 - gi\|213161466\|ref\|ZP_03347176.1\| hypothetical protein Salmoneentericaenterica_16177 [Salmonella enter... gi\|205331415, gi... - gi\|205331415\|gb\|EDZ18179.1\| membrane protein, GPR1/FUN34/yaaH family [Salmonella enterica subsp. ent... gi\|205348734, gi... - gi\|205348734\|gb\|EDZ35365.1\| membrane protein, GPR1/FUN34/yaaH family [Salmonella enterica subsp. ent... gi\|168464467, gi... - gi\|195633000\|gb\|EDX51454.1\| membrane protein, GPR1/FUN34/yaaH family [Salmonella enterica subsp. ent... gi\|16763399, gi\|... - gi\|16763399\|ref\|NP_459014.1\| hypothetical protein STM0009 [Salmonella typhimurium LT2], gi\|16418502\|... gi\|29140552, gi\|... - gi\|29140552\|ref\|NP_803894.1\| hypothetical protein t0009 [Salmonella enterica subsp. enterica serovar... gi\|62126212, gi\|... - gi\|62178579\|ref\|YP_214996.1\| hypothetical protein SC0009 [Salmonella enterica subsp. enterica serova... gi\|25331233, gi\|... - gi\|25331233\|pir\|\|AB0503 conserved hypothetical protein STY0009 [imported] - Salmonella enterica subs...	6.0E-50	[85..263]	[5..176]
gi\|194421768, gi... - gi\|83585318\|ref\|ZP_00923966.1\| COG1584: Predicted membrane protein [Escherichia coli 101-1], gi\|1944... gi\|75189120, gi\|... - gi\|75189120\|ref\|ZP_00702387.1\| COG1584: Predicted membrane protein [Escherichia coli E24377A], gi\|15... YAAH_ECOLI - Inner membrane protein yaaH - Escherichia coli gi\|191167435, gi... - gi\|75229472\|ref\|ZP_00716022.1\| COG1584: Predicted membrane protein [Escherichia coli B7A], gi\|191167... EG11512 - succinate-acetate transporter / Succinate-acetate transporter gi\|193070575, gi... - gi\|75234574\|ref\|ZP_00718915.1\| COG1584: Predicted membrane protein [Escherichia coli E110019], gi\|19... gi\|157159477, gi... - gi\|75194236\|ref\|ZP_00704306.1\| COG1584: Predicted membrane protein [Escherichia coli HS], gi\|1571594... gi\|194412771, gi... - gi\|75209615\|ref\|ZP_00709833.1\| COG1584: Predicted membrane protein [Escherichia coli B171], gi\|19442... gi\|24111460, gi\|... - gi\|24111460\|ref\|NP_705970.1\| hypothetical protein SF0011 [Shigella flexneri 2a str. 301], gi\|2405020... gi\|168766699, gi... - gi\|189364186\|gb\|EDU82605.1\| membrane protein, GPR1/FUN34/yaaH family [Escherichia coli O157:H7 str. ... gi\|30061580, gi\|... - gi\|30061580\|ref\|NP_835751.1\| hypothetical protein S0010 [Shigella flexneri 2a str. 2457T], gi\|300398... gi\|13359466, gi\|... - gi\|15829264\|ref\|NP_308037.1\| hypothetical protein ECs0010 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189366969, gi... - gi\|189366969\|gb\|EDU85385.1\| membrane protein, GPR1/FUN34/yaaH family [Escherichia coli O157:H7 str. ... SATP_ECO57 - Succinate-acetate/proton symporter SatP OS=Escherichia coli O157:H7 GN=satP PE=3 SV=1 gi\|110613630, gi... - gi\|110804082\|ref\|YP_687602.1\| hypothetical protein SFV_0009 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|168781707, gi... - gi\|189000757\|gb\|EDU69743.1\| membrane protein, GPR1/FUN34/yaaH family [Escherichia coli O157:H7 str. ... EG11512 - succinate-acetate transporter / Succinate-acetate transporter gi\|168776605, gi... - gi\|187767994\|gb\|EDU31838.1\| membrane protein, GPR1/FUN34/yaaH family [Escherichia coli O157:H7 str. ... gi\|15799690, gi\|... - gi\|15799690\|ref\|NP_285702.1\| hypothetical protein Z0010 [Escherichia coli O157:H7 EDL933], gi\|125126... gi\|169887508, gi... - gi\|170079673\|ref\|YP_001728993.1\| inner membrane protein associated with acetate transport [Escherich... gi\|168785060, gi... - gi\|189374904\|gb\|EDU93320.1\| membrane protein, GPR1/FUN34/yaaH family [Escherichia coli O157:H7 str. ... gi\|195937683 - gi\|195937683\|ref\|ZP_03083065.1\| hypothetical protein EscherichcoliO157_14747 [Escherichia coli O157:... gi\|194434153, gi... - gi\|194434153\|ref\|ZP_03066421.1\| membrane protein, GPR1/FUN34/yaaH family [Shigella dysenteriae 1012]... gi\|189356084, gi... - gi\|189356084\|gb\|EDU74503.1\| membrane protein, GPR1/FUN34/yaaH family [Escherichia coli O157:H7 str. ... gi\|188014937, gi... - gi\|188014937\|gb\|EDU53059.1\| membrane protein, GPR1/FUN34/yaaH family [Escherichia coli O157:H7 str. ... gi\|218703271, gi... - gi\|218703271\|ref\|YP_002410790.1\| hypothetical protein ECUMN_0011 [Escherichia coli UMN026], gi\|21843... gi\|218698429, gi... - gi\|218698429\|ref\|YP_002406058.1\| hypothetical protein ECIAI39_0010 [Escherichia coli IAI39], gi\|2183... gi\|238899416, gi... - gi\|238899416\|ref\|YP_002925212.1\| conserved inner membrane protein associated with acetate transport ... gi\|242375847, gi... - gi\|251783574\|ref\|YP_002997878.1\| hypothetical protein B21_00010 [Escherichia coli BL21], gi\|24237584... gi\|253774958, gi... - gi\|254286937\|ref\|YP_003052683.1\| conserved inner membrane protein associated with acetate transport ... gi\|254037424, gi... - gi\|254037424\|ref\|ZP_04871501.1\| membrane protein [Escherichia sp. 1_1_43], gi\|226840530\|gb\|EEH72532.... gi\|253972032, gi... - gi\|254160133\|ref\|YP_003043239.1\| conserved inner membrane protein associated with acetate transport ... gi\|254791146, gi... - gi\|254791146\|ref\|YP_003075983.1\| conserved inner membrane protein associated with acetate transport ... gi\|74310624, gi\|... - gi\|74310624\|ref\|YP_309043.1\| hypothetical protein SSON_0011 [Shigella sonnei Ss046], gi\|73854101\|gb\|... gi\|208812229, gi... - gi\|208812229\|ref\|ZP_03253558.1\| membrane protein, GPR1/FUN34/yaaH family [Escherichia coli O157:H7 s... gi\|85674279, gi\|... - gi\|89106894\|ref\|AP_000674.1\| conserved inner membrane protein associated with acetate transport [Esc... gi\|208727607, gi... - gi\|208807806\|ref\|ZP_03250143.1\| membrane protein, GPR1/FUN34/yaaH family [Escherichia coli O157:H7 s... gi\|75256323, gi\|... - gi\|75256323\|ref\|ZP_00727995.1\| COG1584: Predicted membrane protein [Escherichia coli E22], gi\|193065... gi\|209161011, gi... - gi\|209399611\|ref\|YP_002268618.1\| membrane protein, GPR1/FUN34/yaaH family [Escherichia coli O157:H7 ... gi\|188487424, gi... - gi\|75515602\|ref\|ZP_00737759.1\| COG1584: Predicted membrane protein [Escherichia coli 53638], gi\|1884... gi\|208821988, gi... - gi\|208821988\|ref\|ZP_03262308.1\| membrane protein, GPR1/FUN34/yaaH family [Escherichia coli O157:H7 s... gi\|217320531, gi... - gi\|217324310\|ref\|ZP_03440394.1\| membrane protein, GPR1/FUN34/yaaH family [Escherichia coli O157:H7 s... gi\|209917201, gi... - gi\|209917201\|ref\|YP_002291285.1\| hypothetical protein ECSE_0010 [Escherichia coli SE11], gi\|20991046... gi\|218350218, gi... - gi\|218693486\|ref\|YP_002401153.1\| hypothetical protein EC55989_0011 [Escherichia coli 55989], gi\|2183... SATP_SHIFL - Succinate-acetate/proton symporter SatP OS=Shigella flexneri GN=satP PE=3 SV=1 gi\|218359363, gi... - gi\|218552595\|ref\|YP_002385508.1\| hypothetical protein ECIAI1_0011 [Escherichia coli IAI1], gi\|218359...	2.0E-49	[85..263]	[5..176]

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Predicted Domain #1

Region A:
Residues: [1-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDREQSSGN TAFENPKALD SSEGEFISEN NDQSRHSQES ICKIYTAGKN NEYIYIGRQK  60
   61 FLRDDLFEAF GGTLNPGLAP APVHKFANPA PLGLSGFALT TFVLSMFNAR AQGITIPNVV 120
  121 VGCAMFYGGL VQLIAGIWEI ALENTFGGTA LCSFGGFWLS FGAIYIPWFG ILDAYKDKES 180
  181 DLGNALGFYL LGWALFTFGL SVCTMKSTIM FFALFFLLAV TFLLLSIANF TGEVGVTRAG 240
  241 GVLGVIVAFI AWYNAYAGIA TRQNSYIMVH PFALPSNDKV FF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	165.823909
Match:	PF01184
Description:	GPR1/FUN34/yaaH family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [84-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKFANPAPLG LSGFALTTFV LSMFNARAQG ITIPNVVVGC AMFYGGLVQL IAGIWEIALE  60
   61 NTFGGTALCS FGGFWLSFGA IYIPWFGILD AYKDKESDLG NALGFYLLGW ALFTFGLSVC 120
  121 TMKSTIMFFA LFFLLAVTFL LLSIANFTGE VGVTRAGGVL GVIVAFIAWY NAYAGIATRQ 180
  181 NSYIMVHPFA LPSNDKVFF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	141.508638
Match:	PF01184.10
Description:	No description for PF01184.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits