| Protein: | RPD3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 433 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPD3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..433] | [1..433] |
|
|
0.0 | [18..432] | [8..420] |
|
|
0.0 | [18..428] | [8..416] |
|
|
0.0 | [18..432] | [8..420] |
|
|
0.0 | [1..432] | [1..432] |
|
|
0.0 | [18..428] | [8..416] |
|
Region A: Residues: [1-177] |
1 11 21 31 41 51
| | | | | |
1 MVYEATPFDP ITVKPSDKRR VAYFYDADVG NYAYGAGHPM KPHRIRMAHS LIMNYGLYKK 60
61 MEIYRAKPAT KQEMCQFHTD EYIDFLSRVT PDNLEMFKRE SVKFNVGDDC PVFDGLYEYC 120
121 SISGGGSMEG AARLNRGKCD VAVNYAGGLH HAKKSEASGF CYLNDIVLGI IELLRYH
|
| Detection Method: |  |
| Confidence: | 507.40824 |
| Match: | 1c3rA_ |
| Description: | HDAC homologue |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [178-347] |
1 11 21 31 41 51
| | | | | |
1 PRVLYIDIDV HHGDGVEEAF YTTDRVMTCS FHKYGEFFPG TGELRDIGVG AGKNYAVNVP 60
61 LRDGIDDATY RSVFEPVIKK IMEWYQPSAV VLQCGGDSLS GDRLGCFNLS MEGHANCVNY 120
121 VKSFGIPMMV VGGGGYTMRN VARTWCFETG LLNNVVLDKD LPYNEYYEYY
|
| Detection Method: | |
| Confidence: | 507.40824 |
| Match: | 1c3rA_ |
| Description: | HDAC homologue |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [348-433] |
1 11 21 31 41 51
| | | | | |
1 GPDYKLSVRP SNMFNVNTPE YLDKVMTNIF ANLENTKYAP SVQLNHTPRD AEDLGDVEED 60
61 SAEAKDTKGG SQYARDLHVE HDNEFY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
