YRC Public Data Repository - Protein Structure Prediction

Protein:	KRE1
Organism:	Saccharomyces cerevisiae
Length:	313 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KRE1.

Description	E-value	Query Range	Subject Range
KRE1_YEAST - Protein KRE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KRE1 PE=1 SV=1 KRE1 - Cell wall glycoprotein involved in beta-glucan assembly; serves as a K1 killer toxin membrane recept...	3.0E-56	[1..313]	[1..313]
gi\|7305249, gi\|6... - gi\|7305249\|ref\|NP_038748.1\| MAX-interacting protein [Mus musculus], gi\|6692607\|gb\|AAF24761.1\| MGA pr...	7.0E-8	[31..200]	[1579..1744]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-4	[21..236]	[1070..1295]
gi\|6164595 - gi\|6164595\|gb\|AAF04457.1\|AF078161_1 lacunin [Manduca sexta]	0.001	[12..289]	[1144..1419]
KRE1_CANAL - Protein KRE1 (Fragment) OS=Candida albicans GN=KRE1 PE=3 SV=1 KRE1_CANAW - Protein KRE1 OS=Candida albicans (strain WO-1) GN=KRE1 PE=3 SV=1 KRE1_CANAL - Protein KRE1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=KRE1 PE=3 SV=1	0.005	[225..287]	[29..92]

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Predicted Domain #1

Region A:
Residues: [1-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRRTLLHSF ATLLLSLSLW SAAVMAAVTT QVTVVTNVAG ALVTETTIWD PATAAAAATT  60
   61 TAQTGFFTTV FTTTNDVGTT VTLTQTVNRA TMLPTTTTST SSTGKTTTTV PTATSSLSSG 120
  121 LYLSTVTTTN DLGTTVTLTQ TFTHSSTSAT SSASSSVSSS VSSSGSSSSV KTTTSTGSAV 180
  181 AETGTRPDPS TDFTEPPVSA VTSLSIDSYI TITEGTTSTY TTTRAPTSMW VTVVRQGNTI 240
  241 TVQTTFVQRF SSQYVTVASP SVGSIGMGTL TGTVGVIKSA IKKTVSHNEA QHLGMSSFTS 300
  301 ILGGLLTVLI WFL

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	12.29
Match:	1ei3A
Description:	Fibrinogen
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits