YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: POP3
Organism: Saccharomyces cerevisiae
Length: 195 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POP3.

Description E-value Query
Range
Subject
Range
POP3_YEAST - Ribonucleases P/MRP protein subunit POP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
POP3 - Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursor...
gi|190409251 - gi|190409251|gb|EDV12516.1| RNases MRP/P 22.6 kDa subunit [Saccharomyces cerevisiae RM11-1a]
gi|207341944 - gi|207341944|gb|EDZ69861.1| YNL282Wp-like protein [Saccharomyces cerevisiae AWRI1631]
0.0 [1..195] [1..195]

Back

Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSLKSLDK KIAKRRQVYK PVLDNPFTNE AHMWPRVHDQ PLIWQLLQSS IINKLIHIQS  60
   61 KENYPWELYT DFNEIVQYLS GAHGNSDPVC LFVCNKDPDV PLVLLQQIPL LCYMAPMTVK 120
  121 LVQLPKSAMD TFKSVSKYGM LLLRCDDRVD KKFVSQIQKN VDLLQFPWLN AIKYRPTSVK 180
  181 LLKTTVPIVS KKRQK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle