YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: YNL235C
Organism: Saccharomyces cerevisiae
Length: 143 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for YNL235C.

Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLGILEER NSRHCHSHFF LLSREVKCLK QFYTKLCYST NNQPSISKSI PEHMHSLVYM  60
   61 VGHLLVWMLV GTIVLSLDII FPALVTEPHL LHLLSFPSDI SDTLSLSQVT SSYSNLLKDL 120
  121 EVLFFMGSLS VSIINPSSNG CNK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.845 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.845 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.788 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.788 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.775 a.24.9 alpha-catenin/vinculin
View Download 0.775 a.24.9 alpha-catenin/vinculin
View Download 0.765 a.24.4 Hemerythrin
View Download 0.764 f.1.3 delta-Endotoxin (insectocide), N-terminal domain
View Download 0.759 a.45.1 Glutathione S-transferase (GST), C-terminal domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle