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View Structure Prediction Details

Protein: ELA1
Organism: Saccharomyces cerevisiae
Length: 379 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ELA1.

Description E-value Query
Range
Subject
Range
ELA1 - Elongin A, F-box protein that forms a heterodimer with Elc1p and is required for ubiquitin-dependent...
ELOA1_YEAST - Elongin-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELA1 PE=1 SV=1
gi|190409201 - gi|190409201|gb|EDV12466.1| elongin A transcription elongation factor [Saccharomyces cerevisiae RM11...
0.0 [1..379] [1..379]
ELOA1_RAT - Transcription elongation factor B polypeptide 3 OS=Rattus norvegicus GN=Tceb3 PE=1 SV=1
1.0E-50 [1..149] [547..686]
TCEB3 - transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A)
gi|123999418, gi... - gi|123999418|gb|ABM87269.1| transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin...
1.0E-49 [1..149] [548..687]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
5.0E-49 [1..149] [547..685]
EloA-PA - The gene Elongin A is referred to in FlyBase by the symbol Dmel\EloA (CG6755, FBgn0039066). It is a ...
4.0E-46 [3..151] [439..579]
POF4_SCHPO - Elongin-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof4 PE=1 SV=1
pof4 - elongin-A, F-box protein Pof4
1.0E-34 [1..117] [1..120]
gi|20148709, gi|... - gi|21536847|gb|AAM61179.1| unknown [Arabidopsis thaliana], gi|20197958|gb|AAD21730.2| expressed prot...
1.0E-30 [3..130] [12..180]

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Predicted Domain #1
Region A:
Residues: [1-177]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLQTLCEI SLMRNHSNIQ SVSNVPYHLL KRILQKVKIP QLLKLEKSNV LLIFDDDELW  60
   61 LEFLRQDFPT NVHEQFVSKR DIICKYYFDF VKENDIELYH SNQDLLKSCV RQSVVKDIRN 120
  121 NKYRIPYRML YSKYQQEVEK KQEESAERLR LEMQKLQQER EKKQTIVVDH TVYFKKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [178-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTKKTTRLHN EPHSQLYMKS LKDHESRLKH FKDGGFNIAK RHAQRVAFGG QAGGQSSSPK  60
   61 KGPLSIKPEP VKVNRQMDNV TAEKKDVTQP ITPVKKRRSE SPSIFLNRKK PALFRPTPKT 120
  121 NAAGSRPHTT AITNDHRTTS HPYPHKDVVT SISSVTANPV TKGHKKKKSG IFVRNAGSDG 180
  181 DSFPHVTATG PTTRPYIYEP RK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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