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View Structure Prediction Details

Protein: PSY2
Organism: Saccharomyces cerevisiae
Length: 858 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSY2.

Description E-value Query
Range
Subject
Range
gi|114654453 - gi|114654453|ref|XP_001140788.1| PREDICTED: hypothetical protein LOC55671 [Pan troglodytes]
851.0 [0..23] [714..231]
gi|24899184 - gi|24899184|dbj|BAC23106.1| KIAA2010 protein [Homo sapiens]
831.0 [0..23] [714..100]
gi|109103039 - gi|109103039|ref|XP_001112386.1| PREDICTED: similar to falafel CG9351-PA, isoform A [Macaca mulatta]
819.0 [0..24] [714..172]
gi|50511247 - gi|50511247|dbj|BAD32609.1| mKIAA2010 protein [Mus musculus]
816.0 [0..21] [714..26]
gi|76647565 - gi|76647565|ref|XP_883442.1| PREDICTED: similar to CG9351-PA, isoform A isoform 11 [Bos taurus]
804.0 [0..24] [714..1]
gi|73963883 - gi|73963883|ref|XP_854423.1| PREDICTED: similar to CG9351-PA, isoform A isoform 1 [Canis familiaris]
804.0 [0..24] [714..1]
gi|109479813, gi... - gi|149025363|gb|EDL81730.1| similar to KIAA2010 protein (predicted), isoform CRA_b [Rattus norvegicu...
803.0 [0..24] [714..1]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPGTPTTS PTPMDEDTEQ AVSVNTEPKR VKVYILENNE WKDTGTGFCI GEVDEGKFAY  60
   61 LVVSDEDSPT ETLLKSKLEG NIEYQRQEET LIVWKDLGGK DIALSFEESM GCDTLCEFIV 120
  121 HVQRNIESNI SLVTVKSSDN GLGSVHDIIT GPVTLPSNDQ QQ

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 7.92
Match:
Description: No description for 1i2hA was found.

Predicted Domain #2
Region A:
Residues: [163-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSQTLLEALK ILNENTSFDF LKNETIEFIL QSNYIDTLIS HFHKAEEEKI PKDLFLLSNI  60
   61 IKTLILYNKR DILESMVED

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.869 a.50.1 Anaphylotoxins (complement system)

Predicted Domain #3
Region A:
Residues: [242-534]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DRIMGIVGIL EYDTEYPTSK ANHRKYLGSK GPNFKEVIPL ENEDLKIIMK KCFRLQFLKD  60
   61 VVLVRFLDDH NFNLISEIVM DLETCIIDFL QVGTFLDRLI ELYDTKTLPE SSSEKEKFVQ 120
  121 KRKDGIRLLQ QCVQMSINLD AVDRSKFYKT LVRKGLFKVL DYAFHMETDS NVRILATDTI 180
  181 ITIIEHDILL IHNVQNEDSF KRQHKSAPDD KSSHRKYPQD YSSSTDSKLL LILSTILLSD 240
  241 RSPGLREQVV QALNTLLHPE GCVGNGEGSY DLMGRSNYEA KNTSEDFPSF SYG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [535-599]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNSDSINLNN YHYSSDEMNN LEPESESEFQ VMEYFANFYN KIAPILFGPL IKKDITTEMA  60
   61 EIDGQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [600-718]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEKVTKDDLL LIHLVKLVSF VCTEHDRVLS RRFILENGIL DSVSKLIGGN HMMQLRLTAV  60
   61 RCIKNLMCLD DKYYHRYMIS KNLYAPVFKL FQENIDKNNL ANSCIQDFFR IIITECRAY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.972 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain

Predicted Domain #6
Region A:
Residues: [719-858]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSDGHNRKEK TNGSYDGNGN DVKTNVNNNR TNFTILNKYL VQTYGDVLRK ATDIPFIQDM  60
   61 LETGEENQPD HSSFENSIEG GNDISVNMST DGFASNHLED IDIKNVKRLH SEIEHFENDP 120
  121 HYSGDQLAFK KSVDQMNAST 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle