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View Structure Prediction Details

Protein: IBD2
Organism: Saccharomyces cerevisiae
Length: 351 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IBD2.

Description E-value Query
Range
Subject
Range
IBD2_YEAST - Protein IBD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IBD2 PE=1 SV=1
gi|190409150 - gi|190409150|gb|EDV12415.1| hypothetical protein SCRG_03298 [Saccharomyces cerevisiae RM11-1a]
IBD2 - Component of the BUB2-dependent spindle checkpoint pathway, interacts with Bfa1p and functions upstr...
0.0 [1..351] [1..351]

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Predicted Domain #1
Region A:
Residues: [1-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPTNQSSGT TNASVEVLSE DGPMPINVMM QEGVKALTKI LSNQLQDRQA FQNAPHAMQF  60
   61 VIRNGGKALS NARLEELKDA LPKMDSLSLE DELAKIDGQS AYHIDSAEEK ETFESKIGQI 120
  121 ASRNSADFII EEDLQNILDD DLKDSELNLD GEEAEIIFDY ESQELDTPDG IGEKISQMIE 180
  181 SVLPGGFGSE EQGGLRTVTN VEDLDVAEEV TDIDHDTVDA ARLHGDGQHS ISSRKHSRSK 240
  241 NSKKNGHVRR HDFYDESRDH KSCCPHHHYE NLSKLRNYYY HDFEYISRTE NRVPDFSVLV 300
  301 NESSPMCLFC EYYMVFGEPP RNMIKWYNRT FGYNRMPNPP RDEQDSRKRN R

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle