YRC Public Data Repository - Protein Structure Prediction

Protein:	YGP1
Organism:	Saccharomyces cerevisiae
Length:	354 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YGP1.

Description	E-value	Query Range	Subject Range
GATD_PYRHO - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 124... GATD_PYRHO - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus horikoshii GN=gatD PE=3 SV=1	8.0E-93	[22..352]	[70..418]
GATD_PYRAB - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=gatD PE=1... GATD_PYRAB - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus abyssi GN=gatD PE=1 SV=1	5.0E-92	[22..352]	[70..418]
GATD_PYRFU - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /... GATD_PYRFU - Glutamyl-tRNA(Gln) amidotransferase subunit D OS=Pyrococcus furiosus GN=gatD PE=3 SV=1	7.0E-90	[22..352]	[70..418]
gi\|221312409 - gi\|221312409\|ref\|ZP_03594214.1\| hypothetical protein BsubsN3_01501 [Bacillus subtilis subsp. subtili... gi\|221317341 - gi\|221317341\|ref\|ZP_03598635.1\| hypothetical protein BsubsJ_01498 [Bacillus subtilis subsp. subtilis... gi\|221321606 - gi\|221321606\|ref\|ZP_03602900.1\| hypothetical protein BsubsS_01524 [Bacillus subtilis subsp. subtilis... ASG2_BACSU, ASPG... - L-asparaginase 2 OS=Bacillus subtilis GN=ansZ PE=2 SV=1, (O34482) Probable L-asparaginase (EC 3.5.1.... ASPG2_BACSU - L-asparaginase 2 OS=Bacillus subtilis (strain 168) GN=ansZ PE=2 SV=1	2.0E-88	[3..353]	[10..372]
gi\|668327 - gi\|668327\|gb\|AAA62276.1\| chimeric immunoglobulin-L-asparaginase [synthetic construct]	6.0E-86	[42..353]	[289..612]
gi\|148719178, gi... - gi\|148827936\|ref\|YP_001292689.1\| L-asparaginase II [Haemophilus influenzae PittGG], gi\|148719178\|gb\|... gi\|145630486 - gi\|145630486\|ref\|ZP_01786266.1\| L-asparaginase II [Haemophilus influenzae 22.4-21] ASPG2_HAEIN, ASG... - Probable L-asparaginase periplasmic OS=Haemophilus influenzae GN=ansB PE=1 SV=1, (P43843) Probable L... ASPG2_HAEIN - Probable L-asparaginase periplasmic OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 ... gi\|144983876 - gi\|144983876\|gb\|EDJ91318.1\| L-asparaginase II [Haemophilus influenzae R3021]	9.0E-85	[36..353]	[17..346]
ASP3-4, ASP3-1, ... - Cell-wall L-asparaginase II, involved in asparagine catabolism; expression is induced during nitroge... ASP24_YEAST, ASP... - L-asparaginase 2-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ASP3-4 PE=1 SV=1, L-a...	2.0E-84	[4..353]	[6..356]
ASPG_DICCH - L-asparaginase OS=Dickeya chrysanthemi GN=ansB PE=1 SV=1	2.0E-83	[42..353]	[24..345]
gi\|189363657, gi... - gi\|189363657\|gb\|EDU82076.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4486], gi\|168766964\|re... gi\|189369341, gi... - gi\|189369341\|gb\|EDU87757.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4501], gi\|168760099\|re... gi\|189358583, gi... - gi\|189358583\|gb\|EDU77002.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4401], gi\|168753909\|re... gi\|168747551, gi... - gi\|188017927\|gb\|EDU56049.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4113], gi\|168747551\|re... gi\|217327513, gi... - gi\|217327513\|ref\|ZP_03443596.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. TW14588], gi\|2173198... gi\|209158459, gi... - gi\|209397059\|ref\|YP_002272437.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4115], gi\|2091584... gi\|15833087, gi\|... - gi\|15833087\|ref\|NP_311860.1\| L-asparaginase II [Escherichia coli O157:H7 str. Sakai], gi\|13363305\|db... gi\|189379870, gi... - gi\|189379870\|gb\|EDU98286.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC508], gi\|168797532\|ref... gi\|189374047, gi... - gi\|189374047\|gb\|EDU92463.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC869], gi\|168785815\|ref... gi\|168781816, gi... - gi\|189000626\|gb\|EDU69612.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4076], gi\|168781816\|re... gi\|187770804, gi... - gi\|187770804\|gb\|EDU34648.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4196], gi\|168773404\|re... gi\|15833087, gi\|... - gi\|15833087\|ref\|NP_311860.1\| periplasmic L-asparaginase II [Escherichia coli O157:H7], gi\|13363305\|d... gi\|208820500, gi... - gi\|208820500\|ref\|ZP_03260820.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4042], gi\|20874062... gi\|25290105, gi\|... - pir\|\|D85953 periplasmic L-asparaginase II [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|208734271, gi... - gi\|208812994\|ref\|ZP_03254323.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4045], gi\|20873427... gi\|254594309, gi... - gi\|254794909\|ref\|YP_003079746.1\| periplasmic L-asparaginase II [Escherichia coli O157:H7 str. TW1435... gi\|208727388, gi... - gi\|208807587\|ref\|ZP_03249924.1\| L-asparaginase 2 [Escherichia coli O157:H7 str. EC4206], gi\|20872738... gi\|15803496, gi\|... - gi\|15803496\|ref\|NP_289529.1\| L-asparaginase II [Escherichia coli O157:H7 EDL933], gi\|12517506\|gb\|AAG... gi\|195937095 - gi\|195937095\|ref\|ZP_03082477.1\| L-asparaginase II [Escherichia coli O157:H7 str. EC4024]	3.0E-83	[43..353]	[23..345]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFQVVLSAL LACSSAVVAS PIENLFKYRA VKASHSKNIN STLPAWNGSN SSNVTYANGT  60
   61 NSTTNTTTAE SSQLQIIVTG GQVPITNSSL THTNYTRLFN SSSALNITEL YNVARVVNET 120
  121 IQDKSSAGAV VVANAKSLEA VSFFFSIIFD TEKPIVVTED SAYAIPVANN KNATKRGVLS 180
  181 VTSDKLVYSG VFTPPTACSY GAGLPVAIVD DQDEVKWFFD ASKPTLISSD SIIRKEYSNF 240
  241 TTPYGLLENG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	139.218487
Match:	1agx__
Description:	Glutaminase-asparaginase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	2.46687464035052	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.00776502581712	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [251-354]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPIVPIVYDG GYSSSLIDSL SSAVQGLVVV SSGSTNSTSS TIESTEIPVV YAQANTPLNF  60
   61 IDNKDVPKNA VGAGYLSPIK AQILLSIAAV NGVTSKSALE SIFP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	139.218487
Match:	1agx__
Description:	Glutaminase-asparaginase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: