YRC Public Data Repository - Protein Structure Prediction

Protein:	IGO1
Organism:	Saccharomyces cerevisiae
Length:	168 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IGO1.

Description	E-value	Query Range	Subject Range
gi\|190405910 - gi\|190405910\|gb\|EDV09177.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] IGO2 - Protein required for initiation of G0 program; prevents degradation of nutrient-regulated mRNAs via ... gi\|151944078 - gi\|151944078\|gb\|EDN62371.1\| conserved protein [Saccharomyces cerevisiae YJM789] IGO2_YEAST - mRNA stability protein IGO2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IGO2 PE=1 SV... ORFP:9881 - YHR132W-A, Contig c32 35553-35948 reverse complement	190.0	[0..3]	[134..2]
gi\|49525935 - gi\|49525935\|emb\|CAG59554.1\| unnamed protein product [Candida glabrata] gi\|49525935, gi\|... - gi\|50288395\|ref\|XP_446627.1\| unnamed protein product [Candida glabrata], gi\|49525935\|emb\|CAG59554.1\|...	158.0	[0..1]	[134..8]
gi\|49645457 - gi\|49645457\|emb\|CAG99029.1\| KLLA0F27907p [Kluyveromyces lactis] gi\|50312571, gi\|... - gi\|50312571\|ref\|XP_456321.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645457\|emb\|CAG9902...	135.0	[0..24]	[112..35]
gi\|44984513 - gi\|44984513\|gb\|AAS53415.1\| AFR044Cp [Ashbya gossypii ATCC 10895] gi\|44984513, gi\|... - gi\|45198562\|ref\|NP_985591.1\| AFR044Cp [Ashbya gossypii ATCC 10895], gi\|44984513\|gb\|AAS53415.1\| AFR04...	132.0	[0..10]	[138..2]
IGO1_SCHPO - mRNA stability protein mug134 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug134 PE=2 ... mug134 - endosulphine family protein	115.0	[0..26]	[88..25]
gi\|1850768 - gi\|1850768\|dbj\|BAA19234.1\| YNL157W homolog [Schizosaccharomyces pombe]	114.0	[0..26]	[88..6]
gi\|49087066, gi\|... - gi\|67521852\|ref\|XP_658987.1\| hypothetical protein AN1383.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	101.0	[0..17]	[153..2]
gi\|111066412 - gi\|111066412\|gb\|EAT87532.1\| hypothetical protein SNOG_05141 [Phaeosphaeria nodorum SN15]	100.0	[0..17]	[95..2]
gi\|238485079, gi... - gi\|238485079\|ref\|XP_002373778.1\| cAMP-regulated phosphoprotein family protein Igo1, putative [Asperg... gi\|169768126 - gi\|169768126\|ref\|XP_001818534.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83766389 - gi\|83766389\|dbj\|BAE56532.1\| unnamed protein product [Aspergillus oryzae]	99.0	[0..17]	[160..2]
gi\|159131019 - gi\|159131019\|gb\|EDP56132.1\| cAMP-regulated phosphoprotein family protein Igo1, putative [Aspergillus... gi\|70994974, gi\|... - gi\|70994974\|ref\|XP_752263.1\| cAMP-regulated phosphoprotein family protein Igo1 [Aspergillus fumigatu...	92.0	[0..17]	[161..2]

Back

Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNENLSPNS SNPDLTKLNN GESGTIDTSK FSPNEMKLYK MYGKLPSKKD IFKHTMQKRK  60
   61 YFDSGDYALQ KAGIQNNDPI NYGKNNLPLT NPSKLREDII KRRISTCPST ASTAGVVDNA 120
  121 TLIQKEGSIS SGPPSSNNGT IGGGSTSSTP VGNHSSSSSS LYTESPIR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	75.031517
Match:	PF04667.8
Description:	No description for PF04667.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits