YRC Public Data Repository - Protein Structure Prediction

Protein:	GIM3
Organism:	Saccharomyces cerevisiae
Length:	129 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GIM3.

Description	E-value	Query Range	Subject Range
PFD4_AVEFA - Probable prefoldin subunit 4 OS=Avena fatua GN=VIP3 PE=2 SV=1	6.0E-33	[4..128]	[1..124]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-32	[3..128]	[2..128]
PFD4_ARATH - Probable prefoldin subunit 4 OS=Arabidopsis thaliana GN=API3 PE=1 SV=2	4.0E-32	[4..128]	[1..126]
gi\|242033631, gi... - gi\|242033631\|ref\|XP_002464210.1\| hypothetical protein SORBIDRAFT_01g014170 [Sorghum bicolor], gi\|241... gi\|162464278, gi... - gi\|238008328\|gb\|ACR35199.1\| unknown [Zea mays], gi\|162464278\|ref\|NP_001105143.1\| VIP3 protein [Zea m...	6.0E-32	[4..128]	[1..124]
GIM3 - Subunit of the heterohexameric cochaperone prefoldin complex which binds specifically to cytosolic c... gi\|190409138 - gi\|190409138\|gb\|EDV12403.1\| prefoldin subunit 4 [Saccharomyces cerevisiae RM11-1a] PFD4_YEAST - Prefoldin subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIM3 PE=1 SV=1	9.0E-32	[1..129]	[1..129]
gi\|13160148, gi\|... - gi\|1620561\|gb\|AAB17063.1\| C-1, emb\|CAB98782.2\| dJ1162C3.1 (Prefoldin 4 (C-1)) [Homo sapiens]	1.0E-30	[4..128]	[1..126]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLPQGQRN NTQVTFEDQQ KINEFSKLIM RKDAIAQELS LQREEKEYLD DVSLEIELID  60
   61 EDEPVQYKVG DLFIFMKQSK VTAQLEKDAE RLDNKIETLE DKQRDIDSRL DALKAILYAK 120
  121 FGDNINLER

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits