YRC Public Data Repository - Protein Structure Prediction

Protein:	CPT1
Organism:	Saccharomyces cerevisiae
Length:	386 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPT1.

Description	E-value	Query Range	Subject Range
gi\|854507, gi\|171318 - gi\|854507\|emb\|CAA86895.1\| sn-1,2-diacylglycerol cholinephosphotransferase [Saccharomyces cerevisiae]...	0.0	[3..386]	[24..407]
CCDS830.1_1 - null CEPT1 - choline/ethanolamine phosphotransferase 1 gi\|114558962, gi... - gi\|114558966\|ref\|XP_001161701.1\| PREDICTED: choline/ethanolaminephosphotransferase isoform 7 [Pan tr...	1.0E-99	[2..383]	[47..409]
AAPT1_ARATH - Choline/ethanolaminephosphotransferase 1 OS=Arabidopsis thaliana GN=AAPT1 PE=1 SV=1	1.0E-95	[3..383]	[9..387]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-95	[3..383]	[9..387]
bbc-PB - The gene bb in a boxcar is referred to in FlyBase by the symbol Dmel\bbc (CG6016, FBgn0033844). It i...	2.0E-94	[2..385]	[16..380]
gi\|5917787 - gi\|5917787\|gb\|AAD56040.1\|AF183933_1 aminoalcoholphosphotransferase [Brassica rapa]	3.0E-93	[3..383]	[9..387]
gi\|3927806 - gi\|3927806\|gb\|AAC79507.1\| aminoalcoholphosphotransferase [Pimpinella brachycarpa]	1.0E-92	[3..383]	[9..387]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIARIVKHL YQSDDRSFLS NHVLRPFWRK FATIFPLWMA PNLVTLLGFC FIIFNVLTTL  60
   61 YYDPYFDQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [69-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESPRWTYFSY AIGLFLYQTF DACDGMHARR TGQQGPLGEL FDHCIDSINT TLSMIPVCSM  60
   61 TGMGYTYMTI FSQFAILCSF YLSTWEEYHT HKLYLAEFCG PVEGIIVLCI SFIAVGIYGP 120
  121 QTIWHTKVAQ FSWQDFVFDV ETVHLMYAFC TGALIFNIVT AHTNVVRYYE SQSTKSAT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.853872
Match:	PF01066
Description:	CDP-alcohol phosphatidyltransferase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [247-386]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSKTAENISK AVNGLLPFFA YFSSIFTLVL IQPSFISLAL ILSIGFSVAF VVGRMIIAHL  60
   61 TMQPFPMVNF PFLIPTIQLV LYAFMVYVLD YQKGSIVSAL VWMGLGLTLA IHGMFINDII 120
  121 YDITTFLDIY ALSIKHPKEI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits