YRC Public Data Repository - Protein Structure Prediction

Protein:	YNL058C
Organism:	Saccharomyces cerevisiae
Length:	316 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL058C.

Description	E-value	Query Range	Subject Range
YNL058C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... YNF8_YEAST - Vacuolar membrane protein YNL058C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL058...	0.0	[1..316]	[1..316]

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Predicted Domain #1

Region A:
Residues: [1-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKNFIPSV SLVRRDLPTL VTTTTSSTAL SKPTSSVVSE TSSKSLPSLT SSAFSTSSGA  60
   61 TSSSSLIVAS ITPPSTAGNP FILNAADKPN GTVYIAVGAV IGAIFISILI WWLVSSYLSR 120
  121 RFTMTNSYAN DSKNLYRGHH KHSSSLQSNP FDINDEKSYM QDDWDSMSQL ESSQYEDAAS 180
  181 PFNPIQDPFT DNRRSLFISP TLQVSQYEKS HSRHQSKDTN IFIDDPFLYV GTYLEEEEEE 240
  241 EEERKLNLNR PQRAASPERK EKKINSMEGY HKRNQSSLGL IPVASATSNT SSPKKAHKRQ 300
  301 APSMFLDDVL NGREII

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [208-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKSHSRHQSK DTNIFIDDPF LYVGTYLEEE EEEEEERKLN LNRPQRAASP ERKEKKINSM  60
   61 EGYHKRNQSS LGLIPVASAT SNTSSPKKAH KRQAPSMFLD DVLNGREII