YRC Public Data Repository - Protein Structure Prediction

Protein:	POR1
Organism:	Saccharomyces cerevisiae
Length:	283 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POR1.

Description	E-value	Query Range	Subject Range
VDAC2_MOUSE - Voltage-dependent anion-selective channel protein 2 OS=Mus musculus GN=Vdac2 PE=1 SV=2 gi\|53733651 - gb\|AAH83965.1\| Unknown (protein for MGC:98006) [Xenopus laevis]	2.0E-96	[3..283]	[16..295]
VDAC2_RAT - Voltage-dependent anion-selective channel protein 2 OS=Rattus norvegicus GN=Vdac2 PE=1 SV=2	3.0E-96	[3..283]	[16..295]
VDAC2 - voltage-dependent anion channel 2	5.0E-96	[3..280]	[30..306]
VDAC2_PIG - Voltage-dependent anion-selective channel protein 2 OS=Sus scrofa GN=VDAC2 PE=2 SV=1	2.0E-95	[3..283]	[15..294]
gi\|8574295 - gi\|8574295\|emb\|CAB94711.2\| voltage-dependent anion channel 2 [Bos taurus]	5.0E-95	[3..283]	[15..294]
gi\|149726367 - gi\|149726367\|ref\|XP_001504459.1\| PREDICTED: similar to voltage-dependent anion channel 1 [Equus caba... VDAC1_RABIT - Voltage-dependent anion-selective channel protein 1 OS=Oryctolagus cuniculus GN=VDAC1 PE=2 SV=3 VDAC1_BOVIN - Voltage-dependent anion-selective channel protein 1 OS=Bos taurus GN=VDAC1 PE=1 SV=3 gi\|57093539 - gi\|57093539\|ref\|XP_531907.1\| PREDICTED: similar to Voltage-dependent anion-selective channel protein...	3.0E-93	[3..283]	[4..283]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPPVYSDIS RNINDLLNKD FYHATPAAFD VQTTTANGIK FSLKAKQPVK DGPLSTNVEA  60
   61 KLNDKQTGLG LTQGWSNTNN LQTKLEFANL TPGLKNELIT SLTPGVAKSA VLNTTFTQPF 120
  121 FTARGAFDLC LKSPTFVGDL TMAHEGIVGG AEFGYDISAG SISRYAMALS YFAKDYSLGA 180
  181 TLNNEQITTV DFFQNVNAFL QVGAKATMNC KLPNSNVNIE FATRYLPDAS SQVKAKVSDS 240
  241 GIVTLAYKQL LRPGVTLGVG SSFDALKLSE PVHKLGWSLS FDA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	155.408935
Match:	PF01459
Description:	Eukaryotic porin

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits