YRC Public Data Repository - Protein Structure Prediction

Protein:	YNL046W
Organism:	Saccharomyces cerevisiae
Length:	172 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL046W.

Description	E-value	Query Range	Subject Range
gi\|190409038 - gi\|190409038\|gb\|EDV12303.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YNL046W - Putative protein of unknown function; expression depends on Swi5p; GFP-fusion protein localizes to t... YNE6_YEAST - Uncharacterized endoplasmic reticulum membrane protein YNL046W OS=Saccharomyces cerevisiae (strain A...	2.0E-97	[1..172]	[1..172]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHVSKRSIG QFFKRKTSTV DGSKSQKCGT TNQLRKLLHK RRVQKQAVPV ESQYRIPGDF  60
   61 RDNQSVRVKN SMYNSSPSVT PSTHHINERY VRYDINTRPL VVVLAISIVF FGCLLVLKDI 120
  121 IIQSSENILS VSKWKIIGAS FMGTPYTGLL TGLVGPLLSP FSAVSSWLSF IF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits