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View Structure Prediction Details

Protein: YIP3
Organism: Saccharomyces cerevisiae
Length: 176 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIP3.

Description E-value Query
Range
Subject
Range
PR1F2_ARATH - PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1
2.0E-49 [1..175] [1..175]
gi|151944488 - gi|151944488|gb|EDN62766.1| conserved protein [Saccharomyces cerevisiae YJM789]
PRA1_YEAST - Prenylated Rab acceptor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIP3 PE=1 SV=2
YIP3 - Protein localized to COPII vesicles, proposed to be involved in ER to Golgi transport; interacts wit...
gi|190409036 - gi|190409036|gb|EDV12301.1| prenylated Rab acceptor 1 [Saccharomyces cerevisiae RM11-1a]
4.0E-41 [1..176] [1..176]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQLGALAQV SRFTQNFSME NIKSEFQSLQ SKLATLRTPQ EFFNFKKISK PQNFGEVQSR  60
   61 VAYNLKYFSS NYGLIIGCLS IYTLLTNLLL LFVIVLVVAG IVGINKLKGE ELVTPFGSFK 120
  121 TNQLYTGLVC VAVPIGFLAS PISTLLWLIG ASAVSVFGHA SLMEKPIETV FDEETV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 82.823909
Match: PF03208
Description: PRA1 family protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle