| Protein: | BDP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 594 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BDP1.
| Description | E-value | Query Range |
Subject Range |
|
|
5.0E-60 | [2..565] | [526..1086] |
|
|
8.0E-60 | [27..427] | [531..996] |
|
Region A: Residues: [1-384] |
1 11 21 31 41 51
| | | | | |
1 MSSIVNKSGT RFAPKVRQRR AATGGTPTPK PRTPQLFIPE SKEIEEDNSD NDKGVDENET 60
61 AIVEKPSLVG ERSLEGFTLT GTNGHDNEIG DEGPIDASTQ NPKADVIEDN VTLKPAPLQT 120
121 HRDQKVPRSS RLASLSKDNE SRPSFKPSFL DSSSNSNGTA RRLSTISNKL PKKIRLGSIT 180
181 ENDMNLKTFK RHRVLGKPSS AKKPAGAHRI SIVSKISPPT AMTDSLDRNE FSSETSTSRE 240
241 ADENENYVIS KVKDIPKKVR DGESAKYFID EENFTMAELC KPNFPIGQIS ENFEKSKMAK 300
301 KAKLEKRRHL RELRMRARQE FKPLHSLTKE EQEEEEEKRK EERDKLLNAD IPESDRKAHT 360
361 AIQLKLNPDG TMAIDEETMV VDRH
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [385-478] |
1 11 21 31 41 51
| | | | | |
1 KNASIENEYK EKVDENPFAN LYNYGSYGRG SYTDPWTVEE MIKFYKALSM WGTDFNLISQ 60
61 LYPYRSRKQV KAKFVNEEKK RPILIELALR SKLP
|
| Detection Method: | |
| Confidence: | 10.39794 |
| Match: | PF00249 |
| Description: | Myb-like DNA-binding domain |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [479-594] |
1 11 21 31 41 51
| | | | | |
1 PNFDEYCCEI KKNIGTVADF NEKLIELQNE HKHHMKEIEE AKNTAKEEDQ TAQRLNDANL 60
61 NKKGSGGIMT NDLKVYRKTE VVLGTIDDLK RKKLKERNND DNEDNEGSEE EPEIDQ
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.341 | 0.255 | RNA polymerase III transcription factor activity | a.26.1 | 4-helical cytokines |
| View | Download | 0.411 | 0.100 | RNA polymerase III transcription factor activity | a.118.8 | TPR-like |
| View | Download | 0.412 | 0.021 | RNA polymerase III transcription factor activity | a.79.1 | Antitermination factor NusB |
| View | Download | 0.356 | 0.019 | RNA polymerase III transcription factor activity | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.400 | 0.007 | RNA polymerase III transcription factor activity | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.298 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.295 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.289 | N/A | N/A | a.91.1 | Regulator of G-protein signalling, RGS |
| View | Download | 0.271 | N/A | N/A | a.90.1 | Transcription factor STAT-4 N-domain |
| View | Download | 0.266 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.262 | N/A | N/A | a.7.7 | BAG domain |
| View | Download | 0.262 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.257 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.248 | N/A | N/A | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.248 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.234 | N/A | N/A | a.79.1 | Antitermination factor NusB |
| View | Download | 0.234 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.233 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.220 | N/A | N/A | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.220 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.216 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.210 | N/A | N/A | a.66.1 | Transducin (alpha subunit), insertion domain |
| View | Download | 0.206 | N/A | N/A | a.142.1 | PTS-regulatory domain, PRD |
| View | Download | 0.202 | N/A | N/A | a.7.1 | Spectrin repeat |
|
Region A: Residues: [420-512] |
1 11 21 31 41 51
| | | | | |
1 WTVEEMIKFY KALSMWGTDF NLISQLYPYR SRKQVKAKFV NEEKKRPILI ELALRSKLPP 60
61 NFDEYCCEIK KNIGTVADFN EKLIELQNEH KHH
|
| Detection Method: | |
| Confidence: | 1.12 |
| Match: | 2nogA |
| Description: | No description for 2nogA was found. |
|
Region A: Residues: [513-594] |
1 11 21 31 41 51
| | | | | |
1 MKEIEEAKNT AKEEDQTAQR LNDANLNKKG SGGIMTNDLK VYRKTEVVLG TIDDLKRKKL 60
61 KERNNDDNED NEGSEEEPEI DQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.412 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.411 | a.118.8 | TPR-like |
| View | Download | 0.400 | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.356 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.341 | a.26.1 | 4-helical cytokines |
