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View Structure Prediction Details

Protein: BDP1
Organism: Saccharomyces cerevisiae
Length: 594 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BDP1.

Description E-value Query
Range
Subject
Range
NFH_MOUSE - (P19246) Neurofilament triplet H protein (200 kDa neurofilament protein) (Neurofilament heavy polype...
5.0E-60 [2..565] [526..1086]
gi|16554449, gi|... - gi|16554449|ref|NP_003377.1| zonadhesin isoform 3 [Homo sapiens], gi|12667414|gb|AAK01433.1|AF332977...
8.0E-60 [27..427] [531..996]

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Predicted Domain #1
Region A:
Residues: [1-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIVNKSGT RFAPKVRQRR AATGGTPTPK PRTPQLFIPE SKEIEEDNSD NDKGVDENET  60
   61 AIVEKPSLVG ERSLEGFTLT GTNGHDNEIG DEGPIDASTQ NPKADVIEDN VTLKPAPLQT 120
  121 HRDQKVPRSS RLASLSKDNE SRPSFKPSFL DSSSNSNGTA RRLSTISNKL PKKIRLGSIT 180
  181 ENDMNLKTFK RHRVLGKPSS AKKPAGAHRI SIVSKISPPT AMTDSLDRNE FSSETSTSRE 240
  241 ADENENYVIS KVKDIPKKVR DGESAKYFID EENFTMAELC KPNFPIGQIS ENFEKSKMAK 300
  301 KAKLEKRRHL RELRMRARQE FKPLHSLTKE EQEEEEEKRK EERDKLLNAD IPESDRKAHT 360
  361 AIQLKLNPDG TMAIDEETMV VDRH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [385-478]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNASIENEYK EKVDENPFAN LYNYGSYGRG SYTDPWTVEE MIKFYKALSM WGTDFNLISQ  60
   61 LYPYRSRKQV KAKFVNEEKK RPILIELALR SKLP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 10.39794
Match: PF00249
Description: Myb-like DNA-binding domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [479-594]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNFDEYCCEI KKNIGTVADF NEKLIELQNE HKHHMKEIEE AKNTAKEEDQ TAQRLNDANL  60
   61 NKKGSGGIMT NDLKVYRKTE VVLGTIDDLK RKKLKERNND DNEDNEGSEE EPEIDQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [420-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WTVEEMIKFY KALSMWGTDF NLISQLYPYR SRKQVKAKFV NEEKKRPILI ELALRSKLPP  60
   61 NFDEYCCEIK KNIGTVADFN EKLIELQNEH KHH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.12
Match: 2nogA
Description: No description for 2nogA was found.

Predicted Domain #5
Region A:
Residues: [513-594]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEIEEAKNT AKEEDQTAQR LNDANLNKKG SGGIMTNDLK VYRKTEVVLG TIDDLKRKKL  60
   61 KERNNDDNED NEGSEEEPEI DQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle